FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9449, 354 aa 1>>>pF1KE9449 354 - 354 aa - 354 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.1055+/-0.000481; mu= 23.1161+/- 0.030 mean_var=117.0306+/-32.889, 0's: 0 Z-trim(109.5): 539 B-trim: 1171 in 1/51 Lambda= 0.118556 statistics sampled from 16976 (17662) to 16976 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.207), width: 16 Scan time: 6.930 The best scores are: opt bits E(85289) NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] ( 354) 2420 425.9 6.7e-119 XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 iso ( 408) 2399 422.4 8.6e-118 XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 iso ( 298) 2042 361.1 1.8e-99 XP_016865902 (OMIM: 609042) PREDICTED: opsin-5 iso ( 285) 1522 272.1 1e-72 XP_016865901 (OMIM: 609042) PREDICTED: opsin-5 iso ( 285) 1522 272.1 1e-72 XP_016865898 (OMIM: 609042) PREDICTED: opsin-5 iso ( 303) 1412 253.4 4.9e-67 XP_016865904 (OMIM: 609042) PREDICTED: opsin-5 iso ( 243) 1228 221.7 1.3e-57 XP_016865899 (OMIM: 609042) PREDICTED: opsin-5 iso ( 299) 854 157.9 2.6e-38 XP_016865903 (OMIM: 609042) PREDICTED: opsin-5 iso ( 250) 844 156.1 7.9e-38 NP_006574 (OMIM: 605224) visual pigment-like recep ( 337) 595 113.7 6e-25 NP_150598 (OMIM: 606665) melanopsin isoform 1 [Hom ( 478) 547 105.7 2.1e-22 XP_016872445 (OMIM: 606665) PREDICTED: melanopsin ( 528) 547 105.8 2.2e-22 XP_016872446 (OMIM: 606665) PREDICTED: melanopsin ( 405) 515 100.1 8.7e-21 NP_001025186 (OMIM: 606665) melanopsin isoform 2 [ ( 489) 515 100.3 9.5e-21 XP_016872444 (OMIM: 606665) PREDICTED: melanopsin ( 539) 515 100.4 1e-20 NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] ( 402) 491 96.0 1.5e-19 NP_000530 (OMIM: 136880,180380,610445,613731) rhod ( 348) 449 88.7 2e-17 NP_000504 (OMIM: 300821,303700,303800) medium-wave ( 364) 446 88.3 2.9e-17 NP_064445 (OMIM: 300822,303700,303900) long-wave-s ( 364) 438 86.9 7.6e-17 NP_001699 (OMIM: 190900,613522) short-wave-sensiti ( 348) 402 80.7 5.3e-15 NP_001041 (OMIM: 182452) somatostatin receptor typ ( 369) 319 66.6 1e-10 NP_001040 (OMIM: 182451) somatostatin receptor typ ( 391) 314 65.7 1.9e-10 NP_005949 (OMIM: 600665) melatonin receptor type 1 ( 350) 313 65.5 2e-10 NP_001042 (OMIM: 182453) somatostatin receptor typ ( 418) 311 65.3 2.8e-10 NP_001265616 (OMIM: 182453) somatostatin receptor ( 418) 311 65.3 2.8e-10 XP_016884413 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10 XP_006724374 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10 XP_005261778 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10 XP_016884412 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10 XP_011528651 (OMIM: 182453) PREDICTED: somatostati ( 418) 311 65.3 2.8e-10 NP_001186948 (OMIM: 602548) nociceptin receptor is ( 370) 304 64.0 6.1e-10 NP_000904 (OMIM: 602548) nociceptin receptor isofo ( 370) 304 64.0 6.1e-10 NP_872588 (OMIM: 602548) nociceptin receptor isofo ( 370) 304 64.0 6.1e-10 XP_016883343 (OMIM: 602548) PREDICTED: nociceptin ( 370) 304 64.0 6.1e-10 XP_016883341 (OMIM: 602548) PREDICTED: nociceptin ( 388) 304 64.0 6.2e-10 XP_016883342 (OMIM: 602548) PREDICTED: nociceptin ( 388) 304 64.0 6.2e-10 XP_011527130 (OMIM: 602548) PREDICTED: nociceptin ( 388) 304 64.0 6.2e-10 NP_001305782 (OMIM: 602548) nociceptin receptor is ( 399) 304 64.0 6.3e-10 NP_001012740 (OMIM: 600342,613769) RPE-retinal G p ( 253) 297 62.5 1.2e-09 NP_001012738 (OMIM: 600342,613769) RPE-retinal G p ( 291) 296 62.4 1.4e-09 NP_002912 (OMIM: 600342,613769) RPE-retinal G prot ( 295) 295 62.3 1.6e-09 NP_001043 (OMIM: 182454) somatostatin receptor typ ( 388) 296 62.7 1.6e-09 NP_001471 (OMIM: 600377) galanin receptor type 1 [ ( 349) 291 61.7 2.8e-09 NP_001044 (OMIM: 182455) somatostatin receptor typ ( 364) 289 61.4 3.6e-09 NP_001166031 (OMIM: 182455) somatostatin receptor ( 364) 289 61.4 3.6e-09 XP_005263091 (OMIM: 162642) PREDICTED: neuropeptid ( 381) 281 60.1 9.4e-09 XP_005263090 (OMIM: 162642) PREDICTED: neuropeptid ( 381) 281 60.1 9.4e-09 NP_000901 (OMIM: 162642) neuropeptide Y receptor t ( 381) 281 60.1 9.4e-09 NP_005950 (OMIM: 125853,600804) melatonin receptor ( 362) 280 59.9 1e-08 XP_011541141 (OMIM: 125853,600804) PREDICTED: mela ( 362) 280 59.9 1e-08 >>NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] (354 aa) initn: 2420 init1: 2420 opt: 2420 Z-score: 2255.6 bits: 425.9 E(85289): 6.7e-119 Smith-Waterman score: 2420; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354) 10 20 30 40 50 60 pF1KE9 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 TSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 TSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 HSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 HSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAM 250 260 270 280 290 300 310 320 330 340 350 pF1KE9 YNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_859 YNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE 310 320 330 340 350 >>XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 isoform (408 aa) initn: 2399 init1: 2399 opt: 2399 Z-score: 2235.7 bits: 422.4 E(85289): 8.6e-118 Smith-Waterman score: 2399; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352) 10 20 30 40 50 60 pF1KE9 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 TSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 HSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAM 250 260 270 280 290 300 310 320 330 340 350 pF1KE9 YNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEDKGRLWHQ 310 320 330 340 350 360 XP_016 LSCGENSEMTASSETLGTKAHSPLQETREGENEAVGGNNKCSGCEECI 370 380 390 400 >>XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 isoform (298 aa) initn: 2042 init1: 2042 opt: 2042 Z-score: 1906.9 bits: 361.1 E(85289): 1.8e-99 Smith-Waterman score: 2042; 100.0% identity (100.0% similar) in 298 aa overlap (57-354:1-298) 30 40 50 60 70 80 pF1KE9 KLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAEIMTINLAVCDLGISVVG :::::::::::::::::::::::::::::: XP_016 MSSRRKKKLRPAEIMTINLAVCDLGISVVG 10 20 30 90 100 110 120 130 140 pF1KE9 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE9 KHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFF 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE9 CLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE9 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK 220 230 240 250 260 270 330 340 350 pF1KE9 KSLEGFRLHTVTTVRKSSAVLEIHEEWE :::::::::::::::::::::::::::: XP_016 KSLEGFRLHTVTTVRKSSAVLEIHEEWE 280 290 >>XP_016865902 (OMIM: 609042) PREDICTED: opsin-5 isoform (285 aa) initn: 1522 init1: 1522 opt: 1522 Z-score: 1426.4 bits: 272.1 E(85289): 1e-72 Smith-Waterman score: 1522; 100.0% identity (100.0% similar) in 229 aa overlap (124-352:1-229) 100 110 120 130 140 150 pF1KE9 CFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICL :::::::::::::::::::::::::::::: XP_016 MTAVSLDRYLKICYLSYGVWLKRKHAYICL 10 20 30 160 170 180 190 200 210 pF1KE9 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE9 VIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSV 100 110 120 130 140 150 280 290 300 310 320 330 pF1KE9 WSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFR 160 170 180 190 200 210 340 350 pF1KE9 LHTVTTVRKSSAVLEIHEEWE ::::::::::::::::::: XP_016 LHTVTTVRKSSAVLEIHEEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQETREGENE 220 230 240 250 260 270 >>XP_016865901 (OMIM: 609042) PREDICTED: opsin-5 isoform (285 aa) initn: 1522 init1: 1522 opt: 1522 Z-score: 1426.4 bits: 272.1 E(85289): 1e-72 Smith-Waterman score: 1522; 100.0% identity (100.0% similar) in 229 aa overlap (124-352:1-229) 100 110 120 130 140 150 pF1KE9 CFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICL :::::::::::::::::::::::::::::: XP_016 MTAVSLDRYLKICYLSYGVWLKRKHAYICL 10 20 30 160 170 180 190 200 210 pF1KE9 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTA 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE9 VIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSV 100 110 120 130 140 150 280 290 300 310 320 330 pF1KE9 WSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFR 160 170 180 190 200 210 340 350 pF1KE9 LHTVTTVRKSSAVLEIHEEWE ::::::::::::::::::: XP_016 LHTVTTVRKSSAVLEIHEEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQETREGENE 220 230 240 250 260 270 >>XP_016865898 (OMIM: 609042) PREDICTED: opsin-5 isoform (303 aa) initn: 1412 init1: 1412 opt: 1412 Z-score: 1324.4 bits: 253.4 E(85289): 4.9e-67 Smith-Waterman score: 1412; 100.0% identity (100.0% similar) in 212 aa overlap (141-352:36-247) 120 130 140 150 160 170 pF1KE9 WAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVG :::::::::::::::::::::::::::::: XP_016 LPIVFSWRKAQALELFSVYSTLPQASVICPGVWLKRKHAYICLAAIWAYASFWTTMPLVG 10 20 30 40 50 60 180 190 200 210 220 230 pF1KE9 LGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSS 70 80 90 100 110 120 240 250 260 270 280 290 pF1KE9 KEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVV 130 140 150 160 170 180 300 310 320 330 340 350 pF1KE9 PTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH 190 200 210 220 230 240 pF1KE9 EEWE :: XP_016 EEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQETREGENEAVGGNNKCSGCEECI 250 260 270 280 290 300 >>XP_016865904 (OMIM: 609042) PREDICTED: opsin-5 isoform (243 aa) initn: 1228 init1: 1228 opt: 1228 Z-score: 1155.2 bits: 221.7 E(85289): 1.3e-57 Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 187 aa overlap (166-352:1-187) 140 150 160 170 180 190 pF1KE9 CYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVG :::::::::::::::::::::::::::::: XP_016 MPLVGLGDYVPEPFGTSCTLDWWLAQASVG 10 20 30 200 210 220 230 240 250 pF1KE9 GQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAM 40 50 60 70 80 90 260 270 280 290 300 310 pF1KE9 LICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFAC 100 110 120 130 140 150 320 330 340 350 pF1KE9 CQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE ::::::::::::::::::::::::::::::::::::: XP_016 CQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEDKGRLWHQLSCGENSEMTASSET 160 170 180 190 200 210 XP_016 LGTKAHSPLQETREGENEAVGGNNKCSGCEECI 220 230 240 >>XP_016865899 (OMIM: 609042) PREDICTED: opsin-5 isoform (299 aa) initn: 860 init1: 840 opt: 854 Z-score: 808.7 bits: 157.9 E(85289): 2.6e-38 Smith-Waterman score: 1539; 82.1% identity (82.1% similar) in 296 aa overlap (57-352:1-243) 30 40 50 60 70 80 pF1KE9 KLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAEIMTINLAVCDLGISVVG :::::::::::::::::::::::::::::: XP_016 MSSRRKKKLRPAEIMTINLAVCDLGISVVG 10 20 30 90 100 110 120 130 140 pF1KE9 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE9 KHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFF :::::::::::::::::::::: XP_016 KHAYICLAAIWAYASFWTTMPL-------------------------------------- 100 110 210 220 230 240 250 260 pF1KE9 CLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI ::::::::::::::::::::::::::::::::::::::::::::: XP_016 ---------------IIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI 120 130 140 150 270 280 290 300 310 320 pF1KE9 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK 160 170 180 190 200 210 330 340 350 pF1KE9 KSLEGFRLHTVTTVRKSSAVLEIHEEWE :::::::::::::::::::::::::: XP_016 KSLEGFRLHTVTTVRKSSAVLEIHEEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQE 220 230 240 250 260 270 >>XP_016865903 (OMIM: 609042) PREDICTED: opsin-5 isoform (250 aa) initn: 840 init1: 840 opt: 844 Z-score: 800.1 bits: 156.1 E(85289): 7.9e-38 Smith-Waterman score: 930; 75.0% identity (75.0% similar) in 212 aa overlap (141-352:36-194) 120 130 140 150 160 170 pF1KE9 WAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVG :::::::::::::::::::::::::::: XP_016 LPIVFSWRKAQALELFSVYSTLPQASVICPGVWLKRKHAYICLAAIWAYASFWTTMPL-- 10 20 30 40 50 60 180 190 200 210 220 230 pF1KE9 LGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSS ::::::::: XP_016 ---------------------------------------------------IIAKVKSSS 70 240 250 260 270 280 290 pF1KE9 KEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVV 80 90 100 110 120 130 300 310 320 330 340 350 pF1KE9 PTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH 140 150 160 170 180 190 pF1KE9 EEWE :: XP_016 EEDKGRLWHQLSCGENSEMTASSETLGTKAHSPLQETREGENEAVGGNNKCSGCEECI 200 210 220 230 240 250 >>NP_006574 (OMIM: 605224) visual pigment-like receptor (337 aa) initn: 567 init1: 368 opt: 595 Z-score: 568.8 bits: 113.7 E(85289): 6e-25 Smith-Waterman score: 595; 32.4% identity (65.9% similar) in 296 aa overlap (20-313:16-301) 10 20 30 40 50 60 pF1KE9 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSR ::. :.. : ..:: :: . :..: ..: :: . . NP_006 MLRNNLGNSSDSKNEDGSVFSQT---EHNIVAT-YLIMAGMISIISNIIVLGIFIK 10 20 30 40 50 70 80 90 100 110 120 pF1KE9 RKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGS :. :.. . ::::: :.:.: .: :.. : . : ::. ::. :. ..::: .: NP_006 YKELRTPTNAIIINLAVTDIGVSSIGYPMSAASDLYGSWKFGYAGCQVYAGLNIFFGMAS 60 70 80 90 100 110 130 140 150 160 170 pF1KE9 LITMTAVSLDRYLKICYLSYGVWLKRKHAYICLA-AIWAYASFWTTMPLVGLGDYVPEPF . .:.:..:::: :: . : . ..:: : . : . ::. ::..: ..:.:.: NP_006 IGLLTVVAVDRYLTICLPDVGRRMTT-NTYIGLILGAWINGLFWALMPIIGWASYAPDPT 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE9 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKS-SSKEVAHFDS :..::..: . : . . .... . ...: .:. . : .. ..: .... .. . NP_006 GATCTINWRKNDRSFVS--YTMTVIAINFIVPLTVMFYCYYHVTLSIKHHTTSDCTESLN 180 190 200 210 220 240 250 260 270 280 290 pF1KE9 RIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSA : :... :.. ...:: ::.:: ::..: .:..:: : .:: .... :.:::. NP_006 RDWSDQIDVTKMS--VIMICM-FLVAWSPYSIVCLWASFGDPKKIPPPMAIIAPLFAKSS 230 240 250 260 270 280 300 310 320 330 340 350 pF1KE9 AMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE ..::: :: : . :: NP_006 TFYNPCIYVVANKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQNPLASGRI 290 300 310 320 330 354 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:44:47 2016 done: Sun Nov 6 06:44:48 2016 Total Scan time: 6.930 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]