FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1261, 604 aa 1>>>pF1KE1261 604 - 604 aa - 604 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1711+/-0.000349; mu= 20.5408+/- 0.022 mean_var=84.2756+/-17.323, 0's: 0 Z-trim(114.7): 4 B-trim: 0 in 0/57 Lambda= 0.139709 statistics sampled from 24630 (24632) to 24630 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.289), width: 16 Scan time: 10.160 The best scores are: opt bits E(85289) NP_001007254 (OMIM: 131170) endogenous retrovirus ( 604) 4214 859.6 0 >>NP_001007254 (OMIM: 131170) endogenous retrovirus grou (604 aa) initn: 4214 init1: 4214 opt: 4214 Z-score: 4591.6 bits: 859.6 E(85289): 0 Smith-Waterman score: 4214; 99.3% identity (99.7% similar) in 604 aa overlap (1-604:1-604) 10 20 30 40 50 60 pF1KE1 MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CTHNQTTYSVCDPGRGQPYVCYDPKSSPGIWFEIHVGSKEGDLLNQTKVFPSGKDVVSLY ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: NP_001 CTHNQTTYSVCDPGRGQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 FDVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDSPVTTCWDCTTWSTNQQSLGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FDVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDSPVTTCWDCTTWSTNQQSLGP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 IMLTKIPLEPDYKTSTCNSVNLTILEPDQPIWTTGLKAPLGARVSGEEIGPGAYVYLYII ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IMLTKIPLEPDCKTSTCNSVNLTILEPDQPIWTTGLKAPLGARVSGEEIGPGAYVYLYII 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 KKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLFAQLAENIASSLHVASCYVCGGMNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLFAQLAENIASSLHVASCYVCGGMNM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GDQWPWEARELMPQDNFTLTASSLEPAPSSQSIWFLKTSIIGKFCIARWGKAFTDPVGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDQWPWEARELMPQDNFTLTASSLEPAPSSQSIWFLKTSIIGKFCIARWGKAFTDPVGEL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 TCLGQQYYNETLGKTLWRGKSNNSESPHPSPFSRFPSLNHSWYQLEAPNTWQAPSGLYWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TCLGQQYYNETLGKTLWRGKSNNSESPHPSPFSRFPSLNHSWYQLEAPNTWQAPSGLYWI 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 CGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITIGDWKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITIGDWKD 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 SEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGALNLLAQQA .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGALNLLAQQA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 TKMRNVIYQNRLALDYLLAQEEGVCGKFSLTNCCLELDDEGKVIKEITAKIQKLAHIPVQ ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: NP_001 TKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKVIKEITAKIQKLAHIPVQ 550 560 570 580 590 600 pF1KE1 TWKG :::: NP_001 TWKG 604 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:27:09 2016 done: Sun Nov 6 10:27:10 2016 Total Scan time: 10.160 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]