FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1261, 604 aa 1>>>pF1KE1261 604 - 604 aa - 604 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5489+/-0.000806; mu= 18.2123+/- 0.049 mean_var=77.8471+/-15.625, 0's: 0 Z-trim(107.8): 17 B-trim: 0 in 0/52 Lambda= 0.145363 statistics sampled from 9811 (9816) to 9811 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.302), width: 16 Scan time: 3.500 The best scores are: opt bits E(32554) CCDS47595.1 1 gene_id:2086|Hs108|chr7 ( 604) 4214 893.5 0 >>CCDS47595.1 1 gene_id:2086|Hs108|chr7 (604 aa) initn: 4214 init1: 4214 opt: 4214 Z-score: 4774.5 bits: 893.5 E(32554): 0 Smith-Waterman score: 4214; 99.3% identity (99.7% similar) in 604 aa overlap (1-604:1-604) 10 20 30 40 50 60 pF1KE1 MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CTHNQTTYSVCDPGRGQPYVCYDPKSSPGIWFEIHVGSKEGDLLNQTKVFPSGKDVVSLY ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: CCDS47 CTHNQTTYSVCDPGRGQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 FDVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDSPVTTCWDCTTWSTNQQSLGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 FDVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDSPVTTCWDCTTWSTNQQSLGP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 IMLTKIPLEPDYKTSTCNSVNLTILEPDQPIWTTGLKAPLGARVSGEEIGPGAYVYLYII ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 IMLTKIPLEPDCKTSTCNSVNLTILEPDQPIWTTGLKAPLGARVSGEEIGPGAYVYLYII 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 KKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLFAQLAENIASSLHVASCYVCGGMNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 KKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLFAQLAENIASSLHVASCYVCGGMNM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GDQWPWEARELMPQDNFTLTASSLEPAPSSQSIWFLKTSIIGKFCIARWGKAFTDPVGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 GDQWPWEARELMPQDNFTLTASSLEPAPSSQSIWFLKTSIIGKFCIARWGKAFTDPVGEL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 TCLGQQYYNETLGKTLWRGKSNNSESPHPSPFSRFPSLNHSWYQLEAPNTWQAPSGLYWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 TCLGQQYYNETLGKTLWRGKSNNSESPHPSPFSRFPSLNHSWYQLEAPNTWQAPSGLYWI 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 CGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITIGDWKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 CGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITIGDWKD 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 SEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGALNLLAQQA .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 NEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGALNLLAQQA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 TKMRNVIYQNRLALDYLLAQEEGVCGKFSLTNCCLELDDEGKVIKEITAKIQKLAHIPVQ ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: CCDS47 TKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKVIKEITAKIQKLAHIPVQ 550 560 570 580 590 600 pF1KE1 TWKG :::: CCDS47 TWKG 604 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:27:08 2016 done: Sun Nov 6 10:27:09 2016 Total Scan time: 3.500 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]