FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6590, 181 aa 1>>>pF1KE6590 181 - 181 aa - 181 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5415+/-0.000841; mu= 10.9944+/- 0.051 mean_var=59.5725+/-12.170, 0's: 0 Z-trim(105.5): 15 B-trim: 0 in 0/49 Lambda= 0.166169 statistics sampled from 8483 (8485) to 8483 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.261), width: 16 Scan time: 1.070 The best scores are: opt bits E(32554) CCDS47313.1 IRGM gene_id:345611|Hs108|chr5 ( 181) 1167 288.0 2.1e-78 CCDS12629.1 IRGC gene_id:56269|Hs108|chr19 ( 463) 300 80.3 1.9e-15 >>CCDS47313.1 IRGM gene_id:345611|Hs108|chr5 (181 aa) initn: 1167 init1: 1167 opt: 1167 Z-score: 1520.9 bits: 288.0 E(32554): 2.1e-78 Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181) 10 20 30 40 50 60 pF1KE6 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE 130 140 150 160 170 180 pF1KE6 Y : CCDS47 Y >>CCDS12629.1 IRGC gene_id:56269|Hs108|chr19 (463 aa) initn: 320 init1: 240 opt: 300 Z-score: 390.9 bits: 80.3 E(32554): 1.9e-15 Smith-Waterman score: 300; 32.4% identity (66.0% similar) in 188 aa overlap (1-180:24-209) 10 20 30 pF1KE6 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNIT .::. . : .:.::.. :...: : . ... CCDS12 MATSKLPVVPGEEENTILMAKERLEALRT--AFESGDLPQAASHLQELLASTESIRLEVG 10 20 30 40 50 40 50 60 70 80 90 pF1KE6 MAGDSGNGMSTFISALRNTGHEGKASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSA ..:.:: : :..:.:::. : .. : ....:.. . : .: .:.::::::.:: CCDS12 VTGESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSP 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 TTTLENYLMEMQFNRYDFIMVASAQ-FSMNHVMLAKTAEDMGKKFYIVWTKLDMDLST-- ..:: ...:.::::....: . . .. :: .:::::.: ::.: ::.. CCDS12 GCPADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATR 120 130 140 150 160 170 160 170 180 pF1KE6 ----GALPEVQLLQ-IRENVLENLQKERVCEY ... :. .:: ::.. : :.. : . CCDS12 TQRPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPS 180 190 200 210 220 230 CCDS12 HRRHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSL 240 250 260 270 280 290 181 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:38:16 2016 done: Tue Nov 8 14:38:17 2016 Total Scan time: 1.070 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]