FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1224, 271 aa 1>>>pF1KE1224 271 - 271 aa - 271 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2667+/-0.000279; mu= 8.8548+/- 0.018 mean_var=156.9777+/-31.595, 0's: 0 Z-trim(124.0): 31 B-trim: 62 in 1/54 Lambda= 0.102366 statistics sampled from 44849 (44886) to 44849 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.526), width: 16 Scan time: 8.010 The best scores are: opt bits E(85289) NP_001096637 (OMIM: 611639) GATA-type zinc finger ( 271) 1960 300.1 2.9e-81 >>NP_001096637 (OMIM: 611639) GATA-type zinc finger prot (271 aa) initn: 1960 init1: 1960 opt: 1960 Z-score: 1579.8 bits: 300.1 E(85289): 2.9e-81 Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271) 10 20 30 40 50 60 pF1KE1 MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR 190 200 210 220 230 240 250 260 270 pF1KE1 CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG ::::::::::::::::::::::::::::::: NP_001 CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG 250 260 270 271 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:36:42 2016 done: Sun Nov 6 10:36:43 2016 Total Scan time: 8.010 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]