FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1224, 271 aa
  1>>>pF1KE1224 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2150+/-0.000655; mu= 9.2350+/- 0.040
 mean_var=150.1028+/-29.827, 0's: 0 Z-trim(116.9): 14  B-trim: 0 in 0/53
 Lambda= 0.104684
 statistics sampled from 17509 (17520) to 17509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.538), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS45959.1 ZGLP1 gene_id:100125288|Hs108|chr19    ( 271) 1960 306.4 1.4e-83


>>CCDS45959.1 ZGLP1 gene_id:100125288|Hs108|chr19         (271 aa)
 initn: 1960 init1: 1960 opt: 1960  Z-score: 1614.1  bits: 306.4 E(32554): 1.4e-83
Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KE1 MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR
              190       200       210       220       230       240

              250       260       270 
pF1KE1 CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG
       :::::::::::::::::::::::::::::::
CCDS45 CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG
              250       260       270 




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:36:41 2016 done: Sun Nov  6 10:36:41 2016
 Total Scan time:  2.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]