FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6358, 326 aa 1>>>pF1KE6358 326 - 326 aa - 326 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7232+/-0.000772; mu= 13.7154+/- 0.046 mean_var=66.1201+/-13.138, 0's: 0 Z-trim(107.8): 12 B-trim: 0 in 0/50 Lambda= 0.157728 statistics sampled from 9791 (9796) to 9791 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.301), width: 16 Scan time: 1.920 The best scores are: opt bits E(32554) CCDS44923.1 APOF gene_id:319|Hs108|chr12 ( 326) 2141 495.8 1.9e-140 >>CCDS44923.1 APOF gene_id:319|Hs108|chr12 (326 aa) initn: 2141 init1: 2141 opt: 2141 Z-score: 2634.8 bits: 495.8 E(32554): 1.9e-140 Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326) 10 20 30 40 50 60 pF1KE6 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV 250 260 270 280 290 300 310 320 pF1KE6 VSSAPYWGWAIIKSYDLDPGAGSLEI :::::::::::::::::::::::::: CCDS44 VSSAPYWGWAIIKSYDLDPGAGSLEI 310 320 326 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:26:08 2016 done: Tue Nov 8 12:26:08 2016 Total Scan time: 1.920 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]