FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1677, 193 aa
  1>>>pF1KE1677 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8436+/-0.000904; mu= 9.7166+/- 0.054
 mean_var=60.8946+/-12.072, 0's: 0 Z-trim(104.3): 19  B-trim: 0 in 0/48
 Lambda= 0.164356
 statistics sampled from 7814 (7818) to 7814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.24), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS44731.1 IL18 gene_id:3606|Hs108|chr11          ( 193) 1282 312.5 1.1e-85
CCDS58180.1 IL18 gene_id:3606|Hs108|chr11          ( 189) 1237 301.8 1.7e-82


>>CCDS44731.1 IL18 gene_id:3606|Hs108|chr11               (193 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1652.1  bits: 312.5 E(32554): 1.1e-85
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
              130       140       150       160       170       180

              190   
pF1KE1 GDRSIMFTVQNED
       :::::::::::::
CCDS44 GDRSIMFTVQNED
              190   

>>CCDS58180.1 IL18 gene_id:3606|Hs108|chr11               (189 aa)
 initn: 1241 init1: 1081 opt: 1237  Z-score: 1594.6  bits: 301.8 E(32554): 1.7e-82
Smith-Waterman score: 1237; 97.9% identity (97.9% similar) in 193 aa overlap (1-193:1-189)

               10        20        30        40        50        60
pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
       ::::::::::::::::::::::::::    ::::::::::::::::::::::::::::::
CCDS58 MAAEPVEDNCINFVAMKFIDNTLYFI----ENLESDYFGKLESKLSVIRNLNDQVLFIDQ
               10        20            30        40        50      

               70        80        90       100       110       120
pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
        120       130       140       150       160       170      

              190   
pF1KE1 GDRSIMFTVQNED
       :::::::::::::
CCDS58 GDRSIMFTVQNED
        180         




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:46:29 2016 done: Sun Nov  6 10:46:29 2016
 Total Scan time:  1.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]