(Circular) (Six-base) MAPSORT of: pFN21AE5916.seq Check: 9560 from: 1 to: 5635 pFN21AE5916 5635 bp With 182 enzymes: SgfI * December 8, 2014 13:47 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3445 278 Size: 53 83 186 936 1909 2468 Fragments arranged by size: 2468 1909 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2978 1937 Size: 1041 4594 Acc65I G'GTAC_C Cuts at: 2956 2956 Size: 5635 AclI AA'CG_TT Cuts at: 1563 3762 4135 1563 Size: 2199 373 3063 Fragments arranged by size: 3063 2199 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2282 3698 5082 5350 1632 Size: 650 1416 1384 268 1917 Fragments arranged by size: 1917 1416 1384 650 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5438 AflIII A'CryG_T Cuts at: 1203 2211 4534 5511 1203 Size: 1008 2323 977 1327 Fragments arranged by size: 2323 1327 1008 977 AgeI A'CCGG_T Cuts at: 4466 4466 Size: 5635 AhdI GACnn_n'nnGTC Cuts at: 4364 4364 Size: 5635 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5635 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5635 AlwNI CAG_nnn'CTG Cuts at: 3378 4950 3378 Size: 1572 4063 ApaLI G'TGCA_C Cuts at: 2422 3692 4848 2422 Size: 1270 1156 3209 Fragments arranged by size: 3209 1270 1156 ApoI r'AATT_y Cuts at: 1493 2944 3170 3322 5431 1493 Size: 1451 226 152 2109 1697 Fragments arranged by size: 2109 1697 1451 226 152 AseI AT'TA_AT Cuts at: 160 1032 4189 160 Size: 872 3157 1606 Fragments arranged by size: 3157 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5635 AvaI C'yCGr_G Cuts at: 1870 1943 2224 2960 1870 Size: 73 281 736 4545 Fragments arranged by size: 4545 736 281 73 BamHI G'GATC_C Cuts at: 2682 2965 3332 2682 Size: 283 367 4985 Fragments arranged by size: 4985 367 283 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2956 4411 618 Size: 325 217 627 1169 1455 1842 Fragments arranged by size: 1842 1455 1169 627 325 217 BanII G_rGCy'C Cuts at: 1391 2145 2902 2954 1391 Size: 754 757 52 4072 Fragments arranged by size: 4072 757 754 52 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2176 928 Size: 971 277 4387 Fragments arranged by size: 4387 971 277 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3826 3860 1903 Size: 34 1889 34 3678 Fragments arranged by size: 3678 1889 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3527 4737 3527 Size: 1210 4425 BclI T'GATC_A Cuts at: 1548 1548 Size: 5635 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4246 136 Size: 107 122 71 631 605 2574 1525 Fragments arranged by size: 2574 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5630 5630 Size: 5635 BlpI GC'TnA_GC Cuts at: 3052 3052 Size: 5635 Bme1580I G_kGCm'C Cuts at: 1790 2426 3696 4852 1790 Size: 636 1270 1156 2573 Fragments arranged by size: 2573 1270 1156 636 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5635 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3366 4324 442 Size: 416 53 83 399 24 1949 958 1753 Fragments arranged by size: 1949 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2249 1056 Size: 1193 4442 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2090 2434 4295 1239 Size: 851 344 1861 2579 Fragments arranged by size: 2579 1861 851 344 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2698 2787 3760 4625 4923 2698 Size: 89 973 865 298 3410 Fragments arranged by size: 3410 973 865 298 89 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2653 4298 882 Size: 617 1154 1645 2219 Fragments arranged by size: 2219 1645 1154 617 BsaAI yAC'GTr Cuts at: 493 1204 3426 493 Size: 711 2222 2702 Fragments arranged by size: 2702 2222 711 BsaBI GATnn'nnATC Cuts at: 5629 5629 Size: 5635 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3442 3824 4459 275 Size: 53 83 186 936 1909 382 635 1451 Fragments arranged by size: 1909 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4068 4466 4740 4887 5298 4068 Size: 398 274 147 411 4405 Fragments arranged by size: 4405 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5410 Fragments arranged by size: 5410 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2716 1186 Size: 1530 4105 BseYI C'CCAG_C Cuts at: 2062 4838 5334 2062 Size: 2776 496 2363 Fragments arranged by size: 2776 2363 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2150 1163 Size: 573 414 4648 Fragments arranged by size: 4648 573 414 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3085 3846 4874 1540 Size: 275 186 1084 761 1028 2301 Fragments arranged by size: 2301 1084 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2426 3696 3781 4852 2426 Size: 1270 85 1071 3209 Fragments arranged by size: 3209 1270 1071 85 BsmI GAATG_Cn' Cuts at: 2887 3146 3239 2887 Size: 259 93 5283 Fragments arranged by size: 5283 259 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2145 2426 2902 2954 3696 3781 4852 Size: 399 355 281 476 52 742 85 1071 Cuts at: 4852 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 476 399 355 281 85 52 BspEI T'CCGG_A Cuts at: 5298 5298 Size: 5635 BspHI T'CATG_A Cuts at: 3524 5254 3524 Size: 1730 3905 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2729 2990 844 Size: 1885 261 3489 Fragments arranged by size: 3489 1885 261 BsrBI CCG'CTC Cuts at: 1394 1823 2632 3522 1394 Size: 429 809 890 3507 Fragments arranged by size: 3507 890 809 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4130 4304 65 Size: 1183 2882 174 1396 Fragments arranged by size: 2882 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4279 4466 1700 Size: 110 2469 187 2869 Fragments arranged by size: 2869 2469 187 110 BsrGI T'GTAC_A Cuts at: 96 2775 96 Size: 2679 2956 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5635 BssSI C'ACGA_G Cuts at: 3695 4707 3695 Size: 1012 4623 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5635 BstBI TT'CG_AA Cuts at: 4439 4439 Size: 5635 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5635 BstYI r'GATC_y Cuts at: 1972 2682 2817 2965 3332 3717 3734 5186 5272 Size: 710 135 148 367 385 17 1452 86 Cuts at: 5272 5284 5630 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 710 385 367 346 148 135 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2876 2876 Size: 5635 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4144 Fragments arranged by size: 4144 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4896 Fragments arranged by size: 4896 683 56 BtsI GCAGTG_nn' Cuts at: 3151 3945 3965 3151 Size: 794 20 4821 Fragments arranged by size: 4821 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5635 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5600 DraI TTT'AAA Cuts at: 2939 2939 Size: 5635 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4642 809 Size: 507 3326 1802 Fragments arranged by size: 3326 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2199 2670 3082 Size: 54 1425 50 275 18 369 471 412 Cuts at: 3082 3971 5600 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 471 412 369 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3082 1537 Size: 275 1270 4090 Fragments arranged by size: 4090 1270 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3565 1353 Size: 2212 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4222 4596 4742 387 Size: 1064 138 2633 374 146 1280 Fragments arranged by size: 2633 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2090 2282 2434 3698 4295 5082 5350 Size: 393 458 192 152 1264 597 787 268 Cuts at: 5350 1239 Size: 1524 Fragments arranged by size: 1524 1264 787 597 458 393 268 192 152 EcoRI G'AATT_C Cuts at: 2944 3322 2944 Size: 378 5257 FspI TGC'GCA Cuts at: 4141 4141 Size: 5635 HaeII r_GCGC'y Cuts at: 1678 2766 4782 1678 Size: 1088 2016 2531 Fragments arranged by size: 2531 2016 1088 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4276 4308 4350 4382 1373 Size: 32 135 32 2704 32 42 32 2626 Fragments arranged by size: 2704 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2979 3225 669 Size: 988 281 1041 246 3079 Fragments arranged by size: 3079 1041 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5635 HpaI GTT'AAC Cuts at: 3225 3225 Size: 5635 KpnI G_GTAC'C Cuts at: 2960 2960 Size: 5635 MfeI C'AATT_G Cuts at: 3234 3234 Size: 5635 MluI A'CGCG_T Cuts at: 5511 5511 Size: 5635 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4749 4933 1305 Size: 3444 184 2007 Fragments arranged by size: 3444 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2201 2672 10 Size: 54 1425 343 369 471 2973 Fragments arranged by size: 2973 1425 471 369 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2174 2621 2666 2771 2777 3593 3952 Size: 648 1008 447 45 105 6 816 359 Cuts at: 3952 4111 518 Size: 159 2042 Fragments arranged by size: 2042 1008 816 648 447 359 159 105 45 6 MspA1I CmG'CkG Cuts at: 1606 3051 3728 4876 5121 1606 Size: 1445 677 1148 245 2120 Fragments arranged by size: 2120 1445 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4144 Fragments arranged by size: 4144 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5635 NheI G'CTAG_C Cuts at: 1052 2245 1052 Size: 1193 4442 NotI GC'GGCC_GC Cuts at: 3082 3082 Size: 5635 NspI r_CATG'y Cuts at: 1132 1229 2215 2993 4538 1132 Size: 97 986 778 1545 2229 Fragments arranged by size: 2229 1545 986 778 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5635 PciI A'CATG_T Cuts at: 2211 4534 2211 Size: 2323 3312 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5635 PmeI GTTT'AAAC Cuts at: 2939 2939 Size: 5635 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3704 3736 5217 5249 3704 Size: 32 1481 32 4090 Fragments arranged by size: 4090 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5635 PsiI TTA'TAA Cuts at: 3205 3205 Size: 5635 PspXI vC'TCGA_Gb Cuts at: 2224 2224 Size: 5635 PstI C_TGCA'G Cuts at: 830 2987 830 Size: 2157 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5635 SalI G'TCGA_C Cuts at: 1936 2977 1936 Size: 1041 4594 SbfI CC_TGCA'GG Cuts at: 2987 2987 Size: 5635 ScaI AGT'ACT Cuts at: 2230 3883 5595 2230 Size: 1653 1712 2270 Fragments arranged by size: 2270 1712 1653 SexAI A'CCwGG_T Cuts at: 2586 2586 Size: 5635 SfcI C'TryA_G Cuts at: 826 1045 2104 2869 2983 4118 4799 4990 826 Size: 219 1059 765 114 1135 681 191 1471 Fragments arranged by size: 1471 1135 1059 765 681 219 191 114 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5635 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5635 SmaI CCC'GGG Cuts at: 1872 2962 1872 Size: 1090 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2224 2677 2802 3739 4640 4902 Size: 197 926 281 453 125 937 901 262 Cuts at: 4902 820 Size: 1553 Fragments arranged by size: 1553 937 926 901 453 281 262 197 125 SnaBI TAC'GTA Cuts at: 493 3426 493 Size: 2933 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5635 SphI G_CATG'C Cuts at: 1132 2993 1132 Size: 1861 3774 SspI AAT'ATT Cuts at: 5 52 3559 5 Size: 47 3507 2081 Fragments arranged by size: 3507 2081 47 StuI AGG'CCT Cuts at: 1517 2711 1517 Size: 1194 4441 StyI C'CwwG_G Cuts at: 513 1065 2004 3074 513 Size: 552 939 1070 3074 Fragments arranged by size: 3074 1070 939 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2188 3662 3679 3832 4017 4462 325 Size: 1255 608 1474 17 153 185 445 1498 Fragments arranged by size: 1498 1474 1255 608 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2228 2775 3881 Size: 274 80 33 51 1443 251 547 1106 Cuts at: 3881 5593 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1106 547 274 251 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2040 2072 5595 5627 2040 Size: 32 3523 32 2048 Fragments arranged by size: 3523 2048 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5635 XbaI T'CTAG_A Cuts at: 2159 2971 2159 Size: 812 4823 XhoI C'TCGA_G Cuts at: 1943 2224 1943 Size: 281 5354 XmaI C'CCGG_G Cuts at: 1870 2960 1870 Size: 1090 4545 XmnI GAAnn'nnTTC Cuts at: 3764 3764 Size: 5635 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3443 276 Size: 53 83 186 936 1909 2468 Fragments arranged by size: 2468 1909 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspXI PstI PvuI SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PsrI PvuII RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI XcmI