FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5284, 210 aa 1>>>pF1KE5284 210 - 210 aa - 210 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1320+/-0.000773; mu= 11.3351+/- 0.047 mean_var=104.1954+/-20.191, 0's: 0 Z-trim(111.6): 17 B-trim: 83 in 1/51 Lambda= 0.125646 statistics sampled from 12526 (12532) to 12526 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.385), width: 16 Scan time: 2.190 The best scores are: opt bits E(32554) CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19 ( 210) 1344 253.3 8.2e-68 CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1 ( 187) 716 139.4 1.4e-33 CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11 ( 182) 682 133.2 9.8e-32 CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11 ( 182) 677 132.3 1.8e-31 >>CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19 (210 aa) initn: 1344 init1: 1344 opt: 1344 Z-score: 1330.9 bits: 253.3 E(32554): 8.2e-68 Smith-Waterman score: 1344; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210) 10 20 30 40 50 60 pF1KE5 MADGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MADGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 NITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKED 130 140 150 160 170 180 190 200 210 pF1KE5 TEKENREVGDWRKNIDALSGMEGRKKKFES :::::::::::::::::::::::::::::: CCDS42 TEKENREVGDWRKNIDALSGMEGRKKKFES 190 200 210 >>CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1 (187 aa) initn: 718 init1: 594 opt: 716 Z-score: 716.4 bits: 139.4 E(32554): 1.4e-33 Smith-Waterman score: 716; 63.1% identity (82.7% similar) in 179 aa overlap (33-210:2-180) 10 20 30 40 50 60 pF1KE5 DGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELE :....: ::.::::: ::.:.: ::. : CCDS14 MPEVERKPKITASRKLLLKSLMLAKAKECWE 10 20 30 70 80 90 100 110 120 pF1KE5 REAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNI .: :::..:: : :. : :. ::... ::::::.:::.:. ::::::::::: .: CCDS14 QEHEEREAEKVRYLAERIPTLQTRGLSLSALQDLCRELHAKVEVVDEERYDIEAKCLHNT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 TEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTE :: :: :..::::::::: :::::.:::::..::::.. : :.::::.::.::::::: CCDS14 REIKDLKLKVMDLRGKFKRPPLRRVRVSADAMLRALLGSKHKVSMDLRANLKSVKKEDTE 100 110 120 130 140 150 190 200 210 pF1KE5 KENR-EVGDWRKNIDALSGMEGRKKKFES :: ::::::::..:.:::::::: :.. CCDS14 KERPVEVGDWRKNVEAMSGMEGRKKMFDAAKSPTSQ 160 170 180 >>CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11 (182 aa) initn: 557 init1: 430 opt: 682 Z-score: 683.2 bits: 133.2 E(32554): 9.8e-32 Smith-Waterman score: 682; 57.6% identity (83.6% similar) in 177 aa overlap (36-210:5-180) 10 20 30 40 50 60 pF1KE5 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA ::... ..:. .::...:::: :::.: CCDS53 MSQCKKRNRAITARRQHLKSVMLQIAATELEKEE 10 20 30 70 80 90 100 110 120 pF1KE5 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI .:..:: :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :. :. CCDS53 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN :..::.:::::::::: :::::.:::::..::::.. : .::::.:::::::::::: CCDS53 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER 100 110 120 130 140 150 190 200 210 pF1KE5 --REVGDWRKNIDALSGMEGRKKKFES :.::::::::. :::::::: ::: CCDS53 DLRDVGDWRKNIEEKSGMEGRKKMFESES 160 170 180 >>CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11 (182 aa) initn: 532 init1: 430 opt: 677 Z-score: 678.3 bits: 132.3 E(32554): 1.8e-31 Smith-Waterman score: 677; 57.1% identity (83.6% similar) in 177 aa overlap (36-210:5-180) 10 20 30 40 50 60 pF1KE5 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA .:... ..:. .::...:::: :::.: CCDS31 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEE 10 20 30 70 80 90 100 110 120 pF1KE5 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI .:..:: :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :. :. CCDS31 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN :..::.:::::::::: :::::.:::::..::::.. : .::::.:::::::::::: CCDS31 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER 100 110 120 130 140 150 190 200 210 pF1KE5 --REVGDWRKNIDALSGMEGRKKKFES :.::::::::. :::::::: ::: CCDS31 DLRDVGDWRKNIEEKSGMEGRKKMFESES 160 170 180 210 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:24:47 2016 done: Mon Nov 7 23:24:47 2016 Total Scan time: 2.190 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]