Result of FASTA (omim) for
pFN21AE6563
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6563, 175 aa
1>>>pF1KE6563 175 - 175 aa - 175 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1019+/-0.000323; mu= 14.8945+/- 0.020
mean_var=76.5035+/-15.458, 0's: 0 Z-trim(116.7): 25 B-trim: 1190 in 1/51
Lambda= 0.146634
statistics sampled from 27969 (27994) to 27969 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.328), width: 16
Scan time: 4.530
The best scores are: opt bits E(85289)
NP_001002916 (OMIM: 300507) histone H2B type W-T [ ( 175) 1128 247.2 9.8e-66
NP_003510 (OMIM: 602800) histone H2B type 1-L [Hom ( 126) 304 72.8 2.3e-13
NP_003514 (OMIM: 602805) histone H2B type 1-C/E/F/ ( 126) 302 72.4 3e-13
NP_542160 (OMIM: 615045) histone H2B type 1-K [Hom ( 126) 302 72.4 3e-13
NP_003517 (OMIM: 602847) histone H2B type 1-C/E/F/ ( 126) 302 72.4 3e-13
NP_003513 (OMIM: 602804) histone H2B type 1-C/E/F/ ( 126) 302 72.4 3e-13
NP_003516 (OMIM: 602807) histone H2B type 1-C/E/F/ ( 126) 302 72.4 3e-13
NP_001299582 (OMIM: 615045) histone H2B type 1-K [ ( 126) 302 72.4 3e-13
NP_003509 (OMIM: 602798) histone H2B type 1-C/E/F/ ( 126) 302 72.4 3e-13
NP_003519 (OMIM: 601831) histone H2B type 2-E [Hom ( 126) 301 72.2 3.5e-13
NP_066402 (OMIM: 615044) histone H2B type 1-J [Hom ( 126) 301 72.2 3.5e-13
NP_003515 (OMIM: 602806) histone H2B type 1-H [Hom ( 126) 300 72.0 4.1e-13
NP_003518 (OMIM: 602808) histone H2B type 1-O [Hom ( 126) 299 71.8 4.7e-13
NP_733759 (OMIM: 609904) histone H2B type 1-A [Hom ( 127) 299 71.8 4.8e-13
NP_003511 (OMIM: 602801) histone H2B type 1-N [Hom ( 126) 298 71.5 5.5e-13
NP_619790 (OMIM: 602799) histone H2B type 1-D [Hom ( 126) 297 71.3 6.3e-13
NP_066407 (OMIM: 602799) histone H2B type 1-D [Hom ( 126) 297 71.3 6.3e-13
NP_066406 (OMIM: 602803) histone H2B type 1-B [Hom ( 126) 297 71.3 6.3e-13
XP_005249096 (OMIM: 602799) PREDICTED: histone H2B ( 150) 297 71.4 7.2e-13
NP_003512 (OMIM: 602802) histone H2B type 1-M [Hom ( 126) 296 71.1 7.4e-13
NP_778225 (OMIM: 615046) histone H2B type 3-B [Hom ( 126) 296 71.1 7.4e-13
>>NP_001002916 (OMIM: 300507) histone H2B type W-T [Homo (175 aa)
initn: 1128 init1: 1128 opt: 1128 Z-score: 1301.2 bits: 247.2 E(85289): 9.8e-66
Smith-Waterman score: 1128; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KE6 MLRTEVPRLPRSTTAIVWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRTEVPRLPRSTTAIVWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QRKRGRHGPRRCHSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRKRGRHGPRRCHSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATE
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 AGHLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGHLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
130 140 150 160 170
>>NP_003510 (OMIM: 602800) histone H2B type 1-L [Homo sa (126 aa)
initn: 296 init1: 260 opt: 304 Z-score: 361.0 bits: 72.8 E(85289): 2.3e-13
Smith-Waterman score: 304; 45.1% identity (77.0% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_003 MPELAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:...: .:::::: ..: .:...:.:.:.::..:::.::..::. .::.:
NP_003 RS--RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_003 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
90 100 110 120
>>NP_003514 (OMIM: 602805) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 292 init1: 256 opt: 302 Z-score: 358.7 bits: 72.4 E(85289): 3e-13
Smith-Waterman score: 302; 45.1% identity (76.2% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:...: .:::::: ..: .:...:.:.:.::..::: ::..::. .::.:
NP_003 RS--RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_003 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
90 100 110 120
>>NP_542160 (OMIM: 615045) histone H2B type 1-K [Homo sa (126 aa)
initn: 292 init1: 256 opt: 302 Z-score: 358.7 bits: 72.4 E(85289): 3e-13
Smith-Waterman score: 302; 45.1% identity (76.2% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_542 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:...: .:::::: ..: .:...:.:.:.::..::: ::..::. .::.:
NP_542 RS--RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_542 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
90 100 110 120
>>NP_003517 (OMIM: 602847) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 292 init1: 256 opt: 302 Z-score: 358.7 bits: 72.4 E(85289): 3e-13
Smith-Waterman score: 302; 45.1% identity (76.2% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:...: .:::::: ..: .:...:.:.:.::..::: ::..::. .::.:
NP_003 RS--RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_003 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
90 100 110 120
>>NP_003513 (OMIM: 602804) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 292 init1: 256 opt: 302 Z-score: 358.7 bits: 72.4 E(85289): 3e-13
Smith-Waterman score: 302; 45.1% identity (76.2% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:...: .:::::: ..: .:...:.:.:.::..::: ::..::. .::.:
NP_003 RS--RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_003 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
90 100 110 120
>>NP_003516 (OMIM: 602807) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 292 init1: 256 opt: 302 Z-score: 358.7 bits: 72.4 E(85289): 3e-13
Smith-Waterman score: 302; 45.1% identity (76.2% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:...: .:::::: ..: .:...:.:.:.::..::: ::..::. .::.:
NP_003 RS--RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_003 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
90 100 110 120
>>NP_001299582 (OMIM: 615045) histone H2B type 1-K [Homo (126 aa)
initn: 292 init1: 256 opt: 302 Z-score: 358.7 bits: 72.4 E(85289): 3e-13
Smith-Waterman score: 302; 45.1% identity (76.2% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_001 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:...: .:::::: ..: .:...:.:.:.::..::: ::..::. .::.:
NP_001 RS--RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_001 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
90 100 110 120
>>NP_003509 (OMIM: 602798) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 292 init1: 256 opt: 302 Z-score: 358.7 bits: 72.4 E(85289): 3e-13
Smith-Waterman score: 302; 45.1% identity (76.2% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:...: .:::::: ..: .:...:.:.:.::..::: ::..::. .::.:
NP_003 RS--RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_003 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
90 100 110 120
>>NP_003519 (OMIM: 601831) histone H2B type 2-E [Homo sa (126 aa)
initn: 292 init1: 256 opt: 301 Z-score: 357.6 bits: 72.2 E(85289): 3.5e-13
Smith-Waterman score: 301; 45.1% identity (75.4% similar) in 122 aa overlap (47-164:2-121)
20 30 40 50 60 70
pF1KE6 VWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQ-SKQ---RKRGRHGPRRC
:. :.:. . :. ::. . . . : .:
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRK
10 20 30
80 90 100 110 120 130
pF1KE6 HSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGHLARSTKRQT
.: : .:.. : .:::::: ..: .:...:.:.:.::..::: ::..::. .::.:
NP_003 RS--RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST
40 50 60 70 80
140 150 160 170
pF1KE6 ITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK
::. : . ::::::::...: : ::::::: .
NP_003 ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
90 100 110 120
175 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:26:28 2016 done: Tue Nov 8 14:26:28 2016
Total Scan time: 4.530 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]