FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3048, 189 aa 1>>>pF1KE3048 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1439+/-0.000366; mu= 13.8030+/- 0.023 mean_var=63.4926+/-12.863, 0's: 0 Z-trim(112.6): 21 B-trim: 1291 in 1/51 Lambda= 0.160958 statistics sampled from 21595 (21612) to 21595 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.253), width: 16 Scan time: 5.720 The best scores are: opt bits E(85289) NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 1241 296.6 1.5e-80 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1144 274.1 9.2e-74 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1140 273.2 1.8e-73 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 1130 270.9 8.8e-73 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1079 259.0 3.2e-69 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 1061 254.8 5.8e-68 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1030 247.7 8.6e-66 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1022 245.8 3.1e-65 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 959 231.2 7.9e-61 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 958 230.9 9.3e-61 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 954 230.0 1.8e-60 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 953 229.8 2.1e-60 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 951 229.3 2.9e-60 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 685 167.5 1.2e-41 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 355 90.9 1.4e-18 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 330 85.1 7.3e-17 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 160 45.6 6.1e-05 >>NP_066401 (OMIM: 147567) interferon alpha-7 precursor (189 aa) initn: 1241 init1: 1241 opt: 1241 Z-score: 1567.0 bits: 296.6 E(85289): 1.5e-80 Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD ::::::::: NP_066 LKKGLRRKD >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1144 init1: 1144 opt: 1144 Z-score: 1445.2 bits: 274.1 E(85289): 9.2e-74 Smith-Waterman score: 1144; 93.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::::::::: ::::::::.: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::::: ::::::::::::::: :::::::::::::::::::.::::: NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.: ::::: NP_066 LQKRLRRKD >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1440.2 bits: 273.2 E(85289): 1.8e-73 Smith-Waterman score: 1140; 92.1% identity (97.9% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::.:::::::::::::::.:: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::::: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::::: :::::::::::::::.:.:::::::::::::::::.::::: NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.: ::::: NP_002 LQKRLRRKD >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1130 init1: 1130 opt: 1130 Z-score: 1427.7 bits: 270.9 E(85289): 8.8e-73 Smith-Waterman score: 1130; 92.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN ::::::::.::::::::: ::::::::::::::: :::::::::::::::::::.::::: NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.: ::::: NP_067 LQKILRRKD >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 1113 init1: 1079 opt: 1079 Z-score: 1363.7 bits: 259.0 E(85289): 3.2e-69 Smith-Waterman score: 1079; 87.8% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.::::::::::::: ::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::: : ::::.:::::::::: :::::::::::::::::::::.: NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE3 LKKGLRRKD ... ::::. NP_002 FQERLRRKE >>NP_002164 (OMIM: 147580) interferon alpha-16 precursor (189 aa) initn: 1061 init1: 1061 opt: 1061 Z-score: 1341.1 bits: 254.8 E(85289): 5.8e-68 Smith-Waterman score: 1061; 85.7% identity (93.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::::::::: :::::::..: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.: :::.::::.::::..:::::::::::::.::::::...::.:: ::.::::::: NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN ::: ::::::: ::::: :::::::::::::::: :::::::::::::::::::::::: NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.::::::: NP_002 LQKGLRRKD >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 1302.2 bits: 247.7 E(85289): 8.6e-66 Smith-Waterman score: 1030; 81.0% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: :.:.:...::: :: :::::.: ::::: :::.:.:.::: ::::::::::::.:. NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::::: ::::.::::::::::::::::::::::::::::::.::::: NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.: ::::: NP_002 LQKRLRRKD >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1039 init1: 1022 opt: 1022 Z-score: 1292.1 bits: 245.8 E(85289): 3.1e-65 Smith-Waterman score: 1022; 79.9% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: : :::...::. :::::::::::::::: :::.:...::::::::::::::::.: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.:...::.:: ::::::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN ::..::::::.::::: : ::.:::::::::::: :::::::::::::::::::::.:.: NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.. ::::. NP_002 LQERLRRKE >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 974 init1: 959 opt: 959 Z-score: 1213.1 bits: 231.2 E(85289): 7.9e-61 Smith-Waterman score: 959; 77.8% identity (90.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: :.:::...::: :: ::: ::::::::: .::...::::: ::: ::::::::.:: NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::..:::::::.::::::::::.:::.::.. ::.:. ::::::::::: NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::.::: : ::::::: ::::::::::::::: ::::::::::::::::::::: : : NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.. ::::. NP_066 LQERLRRKE >>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs (189 aa) initn: 973 init1: 958 opt: 958 Z-score: 1211.8 bits: 230.9 E(85289): 9.3e-61 Smith-Waterman score: 958; 76.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: :.::::..::: :: ::::::::.:::: :::.:.:::::.:::: ::: :::.: NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::. :::::::.::: ::::.:.::::::...::.:: ::::::::::: NP_076 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::.:: : :::::: : ::::.:::.:::::: :::::::::::::::::::.:.::: NP_076 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.. ::::. NP_076 LQERLRRKE 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:54:05 2016 done: Sun Nov 6 04:54:05 2016 Total Scan time: 5.720 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]