FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1694, 201 aa 1>>>pF1KE1694 201 - 201 aa - 201 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6887+/-0.000261; mu= 13.5996+/- 0.017 mean_var=95.5663+/-19.919, 0's: 0 Z-trim(122.0): 30 B-trim: 2033 in 1/57 Lambda= 0.131196 statistics sampled from 39489 (39527) to 39489 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.463), width: 16 Scan time: 5.280 The best scores are: opt bits E(85289) NP_667341 (OMIM: 609148,611550) natural cytotoxici ( 201) 1386 271.3 7.4e-73 XP_006715112 (OMIM: 609148,611550) PREDICTED: natu ( 201) 1386 271.3 7.4e-73 NP_001138939 (OMIM: 609148,611550) natural cytotox ( 190) 1125 221.9 5.3e-58 NP_001138938 (OMIM: 609148,611550) natural cytotox ( 177) 1106 218.3 6e-57 XP_011512761 (OMIM: 609148,611550) PREDICTED: natu ( 176) 772 155.0 6.5e-38 >>NP_667341 (OMIM: 609148,611550) natural cytotoxicity t (201 aa) initn: 1386 init1: 1386 opt: 1386 Z-score: 1429.0 bits: 271.3 E(85289): 7.4e-73 Smith-Waterman score: 1386; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_667 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_667 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_667 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV 130 140 150 160 170 180 190 200 pF1KE1 PAPLPPPCGSSAHLLPPVPGG ::::::::::::::::::::: NP_667 PAPLPPPCGSSAHLLPPVPGG 190 200 >>XP_006715112 (OMIM: 609148,611550) PREDICTED: natural (201 aa) initn: 1386 init1: 1386 opt: 1386 Z-score: 1429.0 bits: 271.3 E(85289): 7.4e-73 Smith-Waterman score: 1386; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV 130 140 150 160 170 180 190 200 pF1KE1 PAPLPPPCGSSAHLLPPVPGG ::::::::::::::::::::: XP_006 PAPLPPPCGSSAHLLPPVPGG 190 200 >>NP_001138939 (OMIM: 609148,611550) natural cytotoxicit (190 aa) initn: 1119 init1: 1119 opt: 1125 Z-score: 1162.4 bits: 221.9 E(85289): 5.3e-58 Smith-Waterman score: 1125; 90.5% identity (92.6% similar) in 190 aa overlap (1-186:1-190) 10 20 30 40 50 60 pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPR---RQLP :::::::::::::::::::::::::::::::::::::::::::::: : . . : NP_001 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCHCHMGTHCHSSDGP 130 140 150 160 170 180 180 190 200 pF1KE1 -AVVPAPLPPPCGSSAHLLPPVPGG .:.: : : NP_001 RGVIPEPRCP 190 >>NP_001138938 (OMIM: 609148,611550) natural cytotoxicit (177 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1143.3 bits: 218.3 E(85289): 6e-57 Smith-Waterman score: 1106; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV ::::::::::::::::::::::::::::::::::::::::::::: NP_001 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKYAKSTLSGFPQL 130 140 150 160 170 190 200 pF1KE1 PAPLPPPCGSSAHLLPPVPGG >>XP_011512761 (OMIM: 609148,611550) PREDICTED: natural (176 aa) initn: 764 init1: 764 opt: 772 Z-score: 801.7 bits: 155.0 E(85289): 6.5e-38 Smith-Waterman score: 1153; 87.6% identity (87.6% similar) in 201 aa overlap (1-201:1-176) 10 20 30 40 50 60 pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG ::::: :::::::::::::::::::::::::::::: XP_011 VPGKE-------------------------AELHIRDVRGHDASIYVCRVEVLGLGVGTG 70 80 90 130 140 150 160 170 180 pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV 100 110 120 130 140 150 190 200 pF1KE1 PAPLPPPCGSSAHLLPPVPGG ::::::::::::::::::::: XP_011 PAPLPPPCGSSAHLLPPVPGG 160 170 201 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:19:38 2016 done: Sun Nov 6 11:19:39 2016 Total Scan time: 5.280 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]