FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6172, 82 aa 1>>>pF1KE6172 82 - 82 aa - 82 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8167+/-0.000643; mu= 9.4076+/- 0.038 mean_var=45.0926+/- 9.090, 0's: 0 Z-trim(108.6): 5 B-trim: 0 in 0/49 Lambda= 0.190995 statistics sampled from 10303 (10306) to 10303 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.317), width: 16 Scan time: 0.990 The best scores are: opt bits E(32554) CCDS34237.1 UQCRQ gene_id:27089|Hs108|chr5 ( 82) 556 160.0 1.5e-40 >>CCDS34237.1 UQCRQ gene_id:27089|Hs108|chr5 (82 aa) initn: 556 init1: 556 opt: 556 Z-score: 841.3 bits: 160.0 E(32554): 1.5e-40 Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 82 aa overlap (1-82:1-82) 10 20 30 40 50 60 pF1KE6 MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 10 20 30 40 50 60 70 80 pF1KE6 TWGTEEFERSKRKNPAAYENDK :::::::::::::::::::::: CCDS34 TWGTEEFERSKRKNPAAYENDK 70 80 82 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:03:42 2016 done: Tue Nov 8 10:03:42 2016 Total Scan time: 0.990 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]