FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9686, 199 aa 1>>>pF1KB9686 199 - 199 aa - 199 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3452+/-0.000667; mu= 10.5523+/- 0.040 mean_var=123.4468+/-24.954, 0's: 0 Z-trim(114.7): 50 B-trim: 0 in 0/52 Lambda= 0.115434 statistics sampled from 15255 (15305) to 15255 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.47), width: 16 Scan time: 2.130 The best scores are: opt bits E(32554) CCDS33432.1 TCF15 gene_id:6939|Hs108|chr20 ( 199) 1339 232.8 1e-61 CCDS43779.1 SCX gene_id:642658|Hs108|chr8 ( 201) 520 96.4 1.2e-20 >>CCDS33432.1 TCF15 gene_id:6939|Hs108|chr20 (199 aa) initn: 1339 init1: 1339 opt: 1339 Z-score: 1221.3 bits: 232.8 E(32554): 1e-61 Smith-Waterman score: 1339; 99.5% identity (100.0% similar) in 199 aa overlap (1-199:1-199) 10 20 30 40 50 60 pF1KB9 MAFALLRPVGAHVLYPDVRLLSEDEENRSESDASDQSFGCCEGPEAARRGPGPGGGRRAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MAFALLRPVGAHVLYPDVRLLSEDEENRSESDASDQSFGCCEGPEAARRGPGPGGGRRAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 GGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSY :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: CCDS33 GGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETVRLASSY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 IAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADGGRQPRSICTFCLSNQRKGGGRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 IAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADGGRQPRSICTFCLSNQRKGGGRRD 130 140 150 160 170 180 190 pF1KB9 LGGSCLKVRGVAPLRGPRR ::::::::::::::::::: CCDS33 LGGSCLKVRGVAPLRGPRR 190 >>CCDS43779.1 SCX gene_id:642658|Hs108|chr8 (201 aa) initn: 513 init1: 413 opt: 520 Z-score: 484.1 bits: 96.4 E(32554): 1.2e-20 Smith-Waterman score: 616; 59.3% identity (73.4% similar) in 199 aa overlap (1-180:1-194) 10 20 30 40 50 pF1KB9 MAFALLRPVG-AHVLYPDVRLLSEDEENRSESDASDQSFGC------CEGPEAARRGPGP :.:: :::. .. :::.: :::::. :.:..::.. : : : ..::: CCDS43 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEK-PCRVHAARC-GLQGARRR--- 10 20 30 40 50 60 70 80 90 100 110 pF1KB9 GGGRRAGGGGGAG-PVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIE .::::::::: .: : :::..:::::::::.:::::::::::::::::.:::::::: CCDS43 AGGRRAGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIE 60 70 80 90 100 110 120 130 140 150 160 pF1KB9 TLRLASSYIAHLANVLLLGDSADDGQPC------FRAA--GSAKGAVPA--AADG-GRQP :::::::::.::.:::: :.. ::::: :.:: :: : : :: . :: CCDS43 TLRLASSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 120 130 140 150 160 170 170 180 190 pF1KB9 RSICTFCLSNQRKGGGRRDLGGSCLKVRGVAPLRGPRR ..::::::::::: . :: CCDS43 KQICTFCLSNQRKLSKDRDRKTAIRS 180 190 200 199 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:48:12 2016 done: Tue Nov 8 04:48:13 2016 Total Scan time: 2.130 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]