FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9254, 748 aa 1>>>pF1KE9254 748 - 748 aa - 748 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2967+/-0.000352; mu= 11.9296+/- 0.022 mean_var=128.3554+/-25.693, 0's: 0 Z-trim(118.7): 12 B-trim: 734 in 1/54 Lambda= 0.113205 statistics sampled from 31829 (31841) to 31829 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.373), width: 16 Scan time: 13.580 The best scores are: opt bits E(85289) NP_060880 (OMIM: 612667) Holliday junction recogni ( 748) 5033 833.5 0 XP_011509739 (OMIM: 612667) PREDICTED: Holliday ju ( 636) 4150 689.3 1.3e-197 NP_001269891 (OMIM: 612667) Holliday junction reco ( 694) 4149 689.1 1.6e-197 NP_001269892 (OMIM: 612667) Holliday junction reco ( 663) 3948 656.3 1.2e-187 >>NP_060880 (OMIM: 612667) Holliday junction recognition (748 aa) initn: 5033 init1: 5033 opt: 5033 Z-score: 4447.0 bits: 833.5 E(85289): 0 Smith-Waterman score: 5033; 100.0% identity (100.0% similar) in 748 aa overlap (1-748:1-748) 10 20 30 40 50 60 pF1KE9 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE9 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE9 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE9 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE9 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE9 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE9 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN 670 680 690 700 710 720 730 740 pF1KE9 SEERGENTSYRMEEKSDFMLEKLETKSV :::::::::::::::::::::::::::: NP_060 SEERGENTSYRMEEKSDFMLEKLETKSV 730 740 >>XP_011509739 (OMIM: 612667) PREDICTED: Holliday juncti (636 aa) initn: 4148 init1: 4148 opt: 4150 Z-score: 3668.6 bits: 689.3 E(85289): 1.3e-197 Smith-Waterman score: 4150; 99.4% identity (99.5% similar) in 619 aa overlap (130-748:19-636) 100 110 120 130 140 150 pF1KE9 GPELPSHRTVLGADSKSGEVDATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQ .: ::::::::::::::::::::::::: XP_011 MAPCKLQPGVLSFPRTAQSWE-PPAVPQSPLKNELRRKYLTQVDILLQ 10 20 30 40 160 170 180 190 200 210 pF1KE9 GAEYFECAGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GAEYFECAGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLH 50 60 70 80 90 100 220 230 240 250 260 270 pF1KE9 PSSTDMALVPRNDSLSLQETSSSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PSSTDMALVPRNDSLSLQETSSSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKP 110 120 130 140 150 160 280 290 300 310 320 330 pF1KE9 SSIISTKTFIMQNWNSRRRHRYKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSIISTKTFIMQNWNSRRRHRYKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRD 170 180 190 200 210 220 340 350 360 370 380 390 pF1KE9 CKNVLDVSCRKTGLKLEKAFLEVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CKNVLDVSCRKTGLKLEKAFLEVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLD 230 240 250 260 270 280 400 410 420 430 440 450 pF1KE9 EENRFRTLKWLISPVKIVSRPTIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EENRFRTLKWLISPVKIVSRPTIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLP 290 300 310 320 330 340 460 470 480 490 500 510 pF1KE9 DSWAMNMYRGGPASPGGLQGLETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DSWAMNMYRGGPASPGGLQGLETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSD 350 360 370 380 390 400 520 530 540 550 560 570 pF1KE9 SSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDE 410 420 430 440 450 460 580 590 600 610 620 630 pF1KE9 IKEEFDKLHQKYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IKEEFDKLHQKYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKL 470 480 490 500 510 520 640 650 660 670 680 690 pF1KE9 PSSPLGCRKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PSSPLGCRKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLG 530 540 550 560 570 580 700 710 720 730 740 pF1KE9 ASDGVDNTVRPGDQGSSSQPNSEERGENTSYRMEEKSDFMLEKLETKSV ::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ASDGVDNTVRPGDQGSSSQPNSEERGENTSYRMEEKSDFMLEKLETKSV 590 600 610 620 630 >>NP_001269891 (OMIM: 612667) Holliday junction recognit (694 aa) initn: 4149 init1: 4149 opt: 4149 Z-score: 3667.2 bits: 689.1 E(85289): 1.6e-197 Smith-Waterman score: 4559; 92.8% identity (92.8% similar) in 748 aa overlap (1-748:1-694) 10 20 30 40 50 60 pF1KE9 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD :::::::::::::::::::: NP_001 QGLRIWGGRLIKERNEGEIQ---------------------------------------- 70 80 130 140 150 160 170 180 pF1KE9 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL :::::::::::::::::::::::::::::::::::::::::::::: NP_001 --------------PAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL 90 100 110 120 190 200 210 220 230 240 pF1KE9 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS 130 140 150 160 170 180 250 260 270 280 290 300 pF1KE9 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR 190 200 210 220 230 240 310 320 330 340 350 360 pF1KE9 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL 250 260 270 280 290 300 370 380 390 400 410 420 pF1KE9 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP 310 320 330 340 350 360 430 440 450 460 470 480 pF1KE9 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL 370 380 390 400 410 420 490 500 510 520 530 540 pF1KE9 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS 430 440 450 460 470 480 550 560 570 580 590 600 pF1KE9 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT 490 500 510 520 530 540 610 620 630 640 650 660 pF1KE9 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS 550 560 570 580 590 600 670 680 690 700 710 720 pF1KE9 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN 610 620 630 640 650 660 730 740 pF1KE9 SEERGENTSYRMEEKSDFMLEKLETKSV :::::::::::::::::::::::::::: NP_001 SEERGENTSYRMEEKSDFMLEKLETKSV 670 680 690 >>NP_001269892 (OMIM: 612667) Holliday junction recognit (663 aa) initn: 3948 init1: 3948 opt: 3948 Z-score: 3490.0 bits: 656.3 E(85289): 1.2e-187 Smith-Waterman score: 4295; 88.6% identity (88.6% similar) in 748 aa overlap (1-748:1-663) 10 20 30 40 50 60 pF1KE9 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD :::::::::::::::::::: NP_001 QGLRIWGGRLIKERNEGEIQ---------------------------------------- 70 80 130 140 150 160 170 180 pF1KE9 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL ::::::::::::::: NP_001 ---------------------------------------------CAGNRAGRDVRVTPL 90 190 200 210 220 230 240 pF1KE9 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE9 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE9 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE9 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP 280 290 300 310 320 330 430 440 450 460 470 480 pF1KE9 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL 340 350 360 370 380 390 490 500 510 520 530 540 pF1KE9 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS 400 410 420 430 440 450 550 560 570 580 590 600 pF1KE9 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT 460 470 480 490 500 510 610 620 630 640 650 660 pF1KE9 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS 520 530 540 550 560 570 670 680 690 700 710 720 pF1KE9 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN 580 590 600 610 620 630 730 740 pF1KE9 SEERGENTSYRMEEKSDFMLEKLETKSV :::::::::::::::::::::::::::: NP_001 SEERGENTSYRMEEKSDFMLEKLETKSV 640 650 660 748 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:05:09 2016 done: Sun Nov 6 12:05:11 2016 Total Scan time: 13.580 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]