FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3120, 299 aa 1>>>pF1KE3120 299 - 299 aa - 299 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5841+/-0.000849; mu= 13.7172+/- 0.051 mean_var=61.6378+/-12.724, 0's: 0 Z-trim(106.3): 10 B-trim: 402 in 1/51 Lambda= 0.163362 statistics sampled from 8876 (8881) to 8876 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.273), width: 16 Scan time: 2.550 The best scores are: opt bits E(32554) CCDS33379.1 CNOT9 gene_id:9125|Hs108|chr2 ( 299) 1944 466.6 1e-131 CCDS63123.1 CNOT9 gene_id:9125|Hs108|chr2 ( 258) 1572 378.9 2.2e-105 CCDS63122.1 CNOT9 gene_id:9125|Hs108|chr2 ( 331) 1025 250.0 1.8e-66 >>CCDS33379.1 CNOT9 gene_id:9125|Hs108|chr2 (299 aa) initn: 1944 init1: 1944 opt: 1944 Z-score: 2478.2 bits: 466.6 E(32554): 1e-131 Smith-Waterman score: 1944; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299) 10 20 30 40 50 60 pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ 250 260 270 280 290 >>CCDS63123.1 CNOT9 gene_id:9125|Hs108|chr2 (258 aa) initn: 1572 init1: 1572 opt: 1572 Z-score: 2005.5 bits: 378.9 E(32554): 2.2e-105 Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ :::: CCDS63 DNPRFSDLTFCWSSFQRK 250 >>CCDS63122.1 CNOT9 gene_id:9125|Hs108|chr2 (331 aa) initn: 1025 init1: 1025 opt: 1025 Z-score: 1307.0 bits: 250.0 E(32554): 1.8e-66 Smith-Waterman score: 1870; 90.3% identity (90.3% similar) in 331 aa overlap (1-299:1-331) 10 20 30 40 50 60 pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 70 80 90 100 110 120 130 140 pF1KE3 PFLHTVSKTRPFEYLRLTSLGVI--------------------------------GALVK ::::::::::::::::::::::: ::::: CCDS63 PFLHTVSKTRPFEYLRLTSLGVIVETGFHHVGQADLELPTSSDLPASASQSAGITGALVK 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE3 TDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 TDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSH 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE3 VAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 VAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKD 250 260 270 280 290 300 270 280 290 pF1KE3 DTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ ::::::::::::::::::::::::::::::: CCDS63 DTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ 310 320 330 299 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:05:48 2016 done: Sun Nov 6 12:05:48 2016 Total Scan time: 2.550 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]