FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2433, 1304 aa 1>>>pF1KE2433 1304 - 1304 aa - 1304 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.1460+/-0.00133; mu= 0.6250+/- 0.079 mean_var=253.4653+/-52.251, 0's: 0 Z-trim(108.0): 23 B-trim: 67 in 1/50 Lambda= 0.080559 statistics sampled from 9944 (9954) to 9944 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.306), width: 16 Scan time: 5.360 The best scores are: opt bits E(32554) CCDS33356.1 SF3B1 gene_id:23451|Hs108|chr2 (1304) 8685 1024.1 0 CCDS82550.1 SF3B1 gene_id:23451|Hs108|chr2 ( 154) 929 122.1 1.1e-27 CCDS46479.1 SF3B1 gene_id:23451|Hs108|chr2 ( 144) 921 121.2 2e-27 >>CCDS33356.1 SF3B1 gene_id:23451|Hs108|chr2 (1304 aa) initn: 8685 init1: 8685 opt: 8685 Z-score: 5468.3 bits: 1024.1 E(32554): 0 Smith-Waterman score: 8685; 100.0% identity (100.0% similar) in 1304 aa overlap (1-1304:1-1304) 10 20 30 40 50 60 pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE2 IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE2 DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE2 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE2 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE2 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE2 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KE2 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KE2 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KE2 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 pF1KE2 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL :::::::::::::::::::::::::::::::::::::::::::: CCDS33 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1270 1280 1290 1300 >>CCDS82550.1 SF3B1 gene_id:23451|Hs108|chr2 (154 aa) initn: 987 init1: 929 opt: 929 Z-score: 610.3 bits: 122.1 E(32554): 1.1e-27 Smith-Waterman score: 929; 97.9% identity (99.3% similar) in 143 aa overlap (1-143:1-143) 10 20 30 40 50 60 pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE :::::::::::::::::::.. : CCDS82 KHRRTMIISPERLDPFADGNSFPLFYKYSEIYLY 130 140 150 >>CCDS46479.1 SF3B1 gene_id:23451|Hs108|chr2 (144 aa) initn: 921 init1: 921 opt: 921 Z-score: 605.7 bits: 121.2 E(32554): 2e-27 Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139) 10 20 30 40 50 60 pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE ::::::::::::::::::: CCDS46 KHRRTMIISPERLDPFADGFYSAA 130 140 1304 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 20:14:03 2016 done: Mon Nov 7 20:14:04 2016 Total Scan time: 5.360 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]