FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5648, 485 aa
  1>>>pF1KE5648 485 - 485 aa - 485 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3888+/-0.00079; mu= 17.5055+/- 0.048
 mean_var=67.5359+/-13.323, 0's: 0 Z-trim(107.7): 22  B-trim: 0 in 0/50
 Lambda= 0.156066
 statistics sampled from 9761 (9770) to 9761 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.3), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS32706.1 POLG2 gene_id:11232|Hs108|chr17        ( 485) 3295 750.9 7.2e-217


>>CCDS32706.1 POLG2 gene_id:11232|Hs108|chr17             (485 aa)
 initn: 3295 init1: 3295 opt: 3295  Z-score: 4007.0  bits: 750.9 E(32554): 7.2e-217
Smith-Waterman score: 3295; 99.8% identity (100.0% similar) in 485 aa overlap (1-485:1-485)

               10        20        30        40        50        60
pF1KE5 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPAYLET
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS32 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLET
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS
              430       440       450       460       470       480

            
pF1KE5 SAKNV
       :::::
CCDS32 SAKNV
            




485 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:32:12 2016 done: Tue Nov  8 05:32:12 2016
 Total Scan time:  2.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]