FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2199, 93 aa 1>>>pF1KE2199 93 - 93 aa - 93 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9393+/-0.000298; mu= 10.5869+/- 0.018 mean_var=55.7195+/-11.023, 0's: 0 Z-trim(117.6): 68 B-trim: 0 in 0/49 Lambda= 0.171819 statistics sampled from 29731 (29800) to 29731 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.349), width: 16 Scan time: 4.270 The best scores are: opt bits E(85289) NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 619 160.7 3.1e-40 NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 619 160.7 3.1e-40 NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 574 149.5 7.1e-37 NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 423 112.1 1.3e-25 NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 418 110.9 3.1e-25 NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 379 101.2 2.4e-22 NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 371 99.2 9.6e-22 NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 338 91.0 2.8e-19 NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 323 87.3 3.8e-18 NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 290 79.2 1.3e-15 NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 277 75.9 1.1e-14 NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 273 74.9 2.2e-14 NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 272 74.7 2.6e-14 NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 270 74.2 3.8e-14 NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 266 73.1 5e-14 NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 266 73.1 5e-14 NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 266 73.2 6.4e-14 NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 248 68.7 1.6e-12 NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 248 68.7 1.6e-12 NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 247 68.5 2.2e-12 NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 243 67.5 4.2e-12 NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 241 67.0 5.1e-12 XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 241 67.0 5.1e-12 NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 240 66.8 7.4e-12 XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 240 66.8 7.4e-12 XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 241 67.1 7.4e-12 NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 237 66.0 1.1e-11 NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 238 66.3 1.2e-11 NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 231 64.5 2.9e-11 NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 226 63.4 1e-10 NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 224 62.8 1.1e-10 XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 224 62.8 1.1e-10 XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 224 62.8 1.1e-10 NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 190 54.4 3.2e-08 XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 190 54.4 3.2e-08 NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 184 52.9 9.4e-08 NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 182 52.4 1.3e-07 NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 172 49.9 7.1e-07 XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 172 49.9 8.9e-07 XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 172 50.0 9e-07 NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 171 49.7 1.1e-06 XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 171 49.7 1.2e-06 NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 153 45.2 2e-05 NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 144 43.0 0.0001 NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 144 43.0 0.0001 XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 144 43.0 0.0001 NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 142 42.5 0.00013 NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 137 41.2 0.00029 NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 142 42.8 0.00042 NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 124 38.0 0.0032 >>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa) initn: 619 init1: 619 opt: 619 Z-score: 843.3 bits: 160.7 E(85289): 3.1e-40 Smith-Waterman score: 619; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK 10 20 30 40 50 60 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA ::::::::::::::::::::::::::::::::: NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA 70 80 90 >>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa) initn: 619 init1: 619 opt: 619 Z-score: 843.3 bits: 160.7 E(85289): 3.1e-40 Smith-Waterman score: 619; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK 10 20 30 40 50 60 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA ::::::::::::::::::::::::::::::::: NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA 70 80 90 >>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa) initn: 572 init1: 460 opt: 574 Z-score: 783.1 bits: 149.5 E(85289): 7.1e-37 Smith-Waterman score: 574; 94.6% identity (97.8% similar) in 93 aa overlap (1-93:1-92) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :::::::::::::::::::: .:: ::::::::::::::::::::::::::::::::::: NP_002 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK 10 20 30 40 50 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA :.:::::::.::::::::::::::::::::::: NP_002 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA 60 70 80 90 >>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa) initn: 435 init1: 386 opt: 423 Z-score: 580.8 bits: 112.1 E(85289): 1.3e-25 Smith-Waterman score: 423; 59.8% identity (90.2% similar) in 92 aa overlap (1-92:1-92) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::. NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ 10 20 30 40 50 60 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA :.:.: ::::.:::::::: :::.:: ::::. NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN 70 80 90 >>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa) initn: 413 init1: 378 opt: 418 Z-score: 574.1 bits: 110.9 E(85289): 3.1e-25 Smith-Waterman score: 418; 58.7% identity (90.2% similar) in 92 aa overlap (1-92:1-92) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::. NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ 10 20 30 40 50 60 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA :.:.: :::..:::::::: :::.:: ::::. NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN 70 80 90 >>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like (87 aa) initn: 372 init1: 229 opt: 379 Z-score: 522.2 bits: 101.2 E(85289): 2.4e-22 Smith-Waterman score: 379; 55.4% identity (85.9% similar) in 92 aa overlap (1-92:1-87) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::. NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ 10 20 30 40 50 60 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA :.:. :.:::::::: :::.:: ::::. NP_001 PAVV-----GKQVCADPSESWVQEYVYDLELN 70 80 >>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur (89 aa) initn: 385 init1: 319 opt: 371 Z-score: 511.3 bits: 99.2 E(85289): 9.6e-22 Smith-Waterman score: 371; 60.2% identity (79.6% similar) in 93 aa overlap (1-93:1-89) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :. .::: ::.:::::: : .. . ::. ::: ::::.::.:: ::: :: : NP_002 MKGLAAALLVLVCTMALC----SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPK 10 20 30 40 50 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA :.::.:::::::.::::...:::::.:::.:.: NP_002 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA 60 70 80 >>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa) initn: 339 init1: 260 opt: 338 Z-score: 467.0 bits: 91.0 E(85289): 2.8e-19 Smith-Waterman score: 338; 48.9% identity (83.7% similar) in 92 aa overlap (1-92:1-91) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :.::.:::::.: . ::: . ..: ..:: : :::.: .: .:. : .:: ::..::. NP_002 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN 10 20 30 40 50 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA :.:.:.:...:::::.: ..::..:...::.: NP_002 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS 60 70 80 90 >>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor (93 aa) initn: 325 init1: 307 opt: 323 Z-score: 446.7 bits: 87.3 E(85289): 3.8e-18 Smith-Waterman score: 323; 47.3% identity (82.4% similar) in 91 aa overlap (1-90:1-91) 10 20 30 40 50 pF1KE2 MQVSTAALAV-LLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS :..:.::. :: :.:: ... :. . :. :::.::. .::.. : ::.::.:::: NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS 10 20 30 40 50 60 60 70 80 90 pF1KE2 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA ::...:.::::..::..::..::: :..:.. NP_116 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 70 80 90 >>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor (109 aa) initn: 310 init1: 279 opt: 290 Z-score: 401.5 bits: 79.2 E(85289): 1.3e-15 Smith-Waterman score: 290; 55.0% identity (91.7% similar) in 60 aa overlap (31-90:48-107) 10 20 30 40 50 60 pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK :. :::.::. .::.. : ::.::.::::: NP_116 LGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSK 20 30 40 50 60 70 70 80 90 pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA :...:.::::..::..::..::: :..:.. NP_116 PGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 80 90 100 93 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:37:06 2016 done: Sun Nov 6 06:37:07 2016 Total Scan time: 4.270 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]