FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5286, 232 aa 1>>>pF1KE5286 232 - 232 aa - 232 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6704+/-0.000665; mu= 12.1452+/- 0.040 mean_var=69.4920+/-14.319, 0's: 0 Z-trim(110.9): 34 B-trim: 37 in 1/52 Lambda= 0.153853 statistics sampled from 11892 (11926) to 11892 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.366), width: 16 Scan time: 2.060 The best scores are: opt bits E(32554) CCDS32545.1 KCTD11 gene_id:147040|Hs108|chr17 ( 232) 1592 361.8 2.1e-100 CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 529 125.9 2.5e-29 >>CCDS32545.1 KCTD11 gene_id:147040|Hs108|chr17 (232 aa) initn: 1592 init1: 1592 opt: 1592 Z-score: 1916.0 bits: 361.8 E(32554): 2.1e-100 Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232) 10 20 30 40 50 60 pF1KE5 MLGAMFRAGTPMPPNLNSQGGGHYFIDRDGKAFRHILNFLRLGRLDLPRGYGETALLRAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MLGAMFRAGTPMPPNLNSQGGGHYFIDRDGKAFRHILNFLRLGRLDLPRGYGETALLRAE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ADFYQIRPLLDALRELEASQGTPAPTAALLHADVDVSPRLVHFSARRGPHHYELSSVQVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 ADFYQIRPLLDALRELEASQGTPAPTAALLHADVDVSPRLVHFSARRGPHHYELSSVQVD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TFRANLFCTDSECLGALRARFGVASGDRAEGSPHFHLEWAPRPVELPEVEYGRLGLQPLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TFRANLFCTDSECLGALRARFGVASGDRAEGSPHFHLEWAPRPVELPEVEYGRLGLQPLW 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 TGGPGERREVVGTPSFLEEVLRVALEHGFRLDSVFPDPEDLLNSRSLRFVRH :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TGGPGERREVVGTPSFLEEVLRVALEHGFRLDSVFPDPEDLLNSRSLRFVRH 190 200 210 220 230 >>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa) initn: 457 init1: 246 opt: 529 Z-score: 640.0 bits: 125.9 E(32554): 2.5e-29 Smith-Waterman score: 529; 40.2% identity (68.6% similar) in 239 aa overlap (1-232:28-259) 10 20 30 pF1KE5 MLGAMFRAGTPMPPNLNSQGGGHYFIDRDGKAF :::::: .: :: . .:: :. :::::::.: CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF-SGK-MPTKRDSQ--GNCFIDRDGKVF 10 20 30 40 50 40 50 60 70 80 90 pF1KE5 RHILNFLRLGRLDLPRGYGETALLRAEADFYQIRPLLDALRELEASQGTPAPTAALLHAD :.:::::: ..::::. . : .::: ::::::..::..::.: :. . . : :.:. CCDS31 RYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEV-ELSKAEKNAMLNIT 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE5 VDVSPRLVHFSARRGPHHYELSSVQVDTFRANLFCTDSECLGALRAR-FGVASGDRAEGS .. . :::..:..:. : ::: ....: ::.: :. : : .. : ..:. . . CCDS31 LNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSIT 120 130 140 150 160 170 160 170 180 190 200 pF1KE5 PHFH------LEWAPRPVELPEVEYGRLGLQPLWTGGPGERREVVGTPSFLEEVLRVALE :.. :.:. ::: :: . .:. ::. :... .. . :.::::..:: CCDS31 SHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVV-PANK-QINSFQVFVEEVLKIALS 180 190 200 210 220 230 210 220 230 pF1KE5 HGFRLDSVFPDPEDLLNSRSLRFVRH :: .:: : :..:.. .:..:. CCDS31 DGFCIDSSHPHALDFMNNKIIRLIRYR 240 250 260 232 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:25:51 2016 done: Mon Nov 7 23:25:51 2016 Total Scan time: 2.060 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]