FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9429, 353 aa 1>>>pF1KE9429 353 - 353 aa - 353 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6687+/-0.00119; mu= 14.5314+/- 0.071 mean_var=157.6089+/-58.318, 0's: 0 Z-trim(103.0): 149 B-trim: 992 in 2/49 Lambda= 0.102161 statistics sampled from 6976 (7226) to 6976 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.567), E-opt: 0.2 (0.222), width: 16 Scan time: 2.520 The best scores are: opt bits E(32554) CCDS32398.1 GPR139 gene_id:124274|Hs108|chr16 ( 353) 2376 363.1 2e-100 CCDS11698.1 GPR142 gene_id:350383|Hs108|chr17 ( 462) 968 155.7 7e-38 >>CCDS32398.1 GPR139 gene_id:124274|Hs108|chr16 (353 aa) initn: 2376 init1: 2376 opt: 2376 Z-score: 1916.3 bits: 363.1 E(32554): 2e-100 Smith-Waterman score: 2376; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353) 10 20 30 40 50 60 pF1KE9 MEHTHAHLAANSSLSWWSPGSACGLGFVPVVYYSLLLCLGLPANILTVIILSQLVARRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MEHTHAHLAANSSLSWWSPGSACGLGFVPVVYYSLLLCLGLPANILTVIILSQLVARRQK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 SSYNYLLALAAADILVLFFIVFVDFLLEDFILNMQMPQVPDKIIEVLEFSSIHTSIWITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SSYNYLLALAAADILVLFFIVFVDFLLEDFILNMQMPQVPDKIIEVLEFSSIHTSIWITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 PLTIDRYIAVCHPLKYHTVSYPARTRKVIVSVYITCFLTSIPYYWWPNIWTEDYISTSVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PLTIDRYIAVCHPLKYHTVSYPARTRKVIVSVYITCFLTSIPYYWWPNIWTEDYISTSVH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 HVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAILFTITSIFATL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 HVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAILFTITSIFATL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 WAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAINFFLYCFISKRFRTMAAATL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 WAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAINFFLYCFISKRFRTMAAATL 250 260 270 280 290 300 310 320 330 340 350 pF1KE9 KAFFKCQKQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGKPIKVSP ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 KAFFKCQKQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGKPIKVSP 310 320 330 340 350 >>CCDS11698.1 GPR142 gene_id:350383|Hs108|chr17 (462 aa) initn: 938 init1: 646 opt: 968 Z-score: 793.5 bits: 155.7 E(32554): 7e-38 Smith-Waterman score: 968; 45.7% identity (77.8% similar) in 293 aa overlap (21-310:151-442) 10 20 30 40 50 pF1KE9 MEHTHAHLAANSSLSWWSPGSACGLGFVPVVYYSLLLCLGLPANILTVII : : : .::.:::.:: ::::...::.. CCDS11 GQPRVTLLPTPHVSGLSQEFESHWPEIAERSPCVAGVIPVIYYSVLLGLGLPVSLLTAVA 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE9 LSQLVARRQKSSYNYLLALAAADILVLFFIVFVDFLLEDFILNMQMPQVPDKIIEVLEFS :..:..: .. :: :::::.:.::.. :::. :::. .: :.::. . ..:::. CCDS11 LARLATRTRRPSYYYLLALTASDIIIQVVIVFAGFLLQGAVLARQVPQAVVRTANILEFA 190 200 210 220 230 240 120 130 140 150 160 170 pF1KE9 SIHTSIWITVPLTIDRYIAVCHPLKYHTVSYPARTRKVIVSVYITCFLTSIPYYWWPNIW . :.:.::.. ::.::: :.::::.....: :.:::..:..: . .::.::.::: ..: CCDS11 ANHASVWIAILLTVDRYTALCHPLHHRAASSPGRTRRAIAAVLSAALLTGIPFYWWLDMW 250 260 270 280 290 300 180 190 200 210 220 230 pF1KE9 TEDYISTSVHHVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAIL . .. .:: : ::.:::..::..:.. :: :...:::.. :. .::.:::: CCDS11 RDTDSPRTLDEVLKWAHCLTVYFIPCGVFLVTNSAIIHRLRRRGRSGLQPR-VGKSTAIL 310 320 330 340 350 240 250 260 270 280 290 pF1KE9 FTITSIFATLWAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAINFFLYCFISK . ::..:. :::::....:::.: ::.. : ::. :.:::.:.:.:: :: ::::.:: CCDS11 LGITTLFTLLWAPRVFVMLYHMYVAPVHRDWRVHLALDVANMVAMLHTAANFGLYCFVSK 360 370 380 390 400 410 300 310 320 330 340 pF1KE9 RFRTMAAATLK-AFFKCQ--KQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGK ::. . ... :.. : .:: CCDS11 TFRATVRQVIHDAYLPCTLASQPEGMAAKPVMEPPGLPTGAEV 420 430 440 450 460 353 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:19:42 2016 done: Sun Nov 6 12:19:42 2016 Total Scan time: 2.520 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]