FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9939, 527 aa 1>>>pF1KB9939 527 - 527 aa - 527 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4621+/-0.000849; mu= 17.7144+/- 0.051 mean_var=70.8429+/-14.410, 0's: 0 Z-trim(107.0): 12 B-trim: 6 in 1/50 Lambda= 0.152379 statistics sampled from 9278 (9285) to 9278 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.285), width: 16 Scan time: 2.920 The best scores are: opt bits E(32554) CCDS32073.1 POLE2 gene_id:5427|Hs108|chr14 ( 527) 3542 788.0 0 CCDS55915.1 POLE2 gene_id:5427|Hs108|chr14 ( 502) 3352 746.2 2e-215 CCDS55914.1 POLE2 gene_id:5427|Hs108|chr14 ( 501) 2873 640.9 1e-183 >>CCDS32073.1 POLE2 gene_id:5427|Hs108|chr14 (527 aa) initn: 3542 init1: 3542 opt: 3542 Z-score: 4206.3 bits: 788.0 E(32554): 0 Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI 430 440 450 460 470 480 490 500 510 520 pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF ::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF 490 500 510 520 >>CCDS55915.1 POLE2 gene_id:5427|Hs108|chr14 (502 aa) initn: 3352 init1: 3352 opt: 3352 Z-score: 3980.9 bits: 746.2 E(32554): 2e-215 Smith-Waterman score: 3352; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI 430 440 450 460 470 480 490 500 510 520 pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF ::::::::::::::::::: CCDS55 ADKYDPFTTTNTECLCINPVRM 490 500 >>CCDS55914.1 POLE2 gene_id:5427|Hs108|chr14 (501 aa) initn: 3350 init1: 2873 opt: 2873 Z-score: 3411.8 bits: 640.9 E(32554): 1e-183 Smith-Waterman score: 3302; 95.1% identity (95.1% similar) in 527 aa overlap (1-527:1-501) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::: :::::::::::: CCDS55 MIERSVVEAAVQECSQSVDETI--------------------------LLMTNHPAPNLF 70 80 90 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 100 110 120 130 140 150 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 160 170 180 190 200 210 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV 220 230 240 250 260 270 310 320 330 340 350 360 pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR 280 290 300 310 320 330 370 380 390 400 410 420 pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV 340 350 360 370 380 390 430 440 450 460 470 480 pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI 400 410 420 430 440 450 490 500 510 520 pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF ::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF 460 470 480 490 500 527 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:23:31 2016 done: Sun Nov 6 12:23:31 2016 Total Scan time: 2.920 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]