(Circular) (Six-base) MAPSORT of: pFN21AE5956.seq Check: 9013 from: 1 to: 5641 pFN21AE5956 5641 bp With 182 enzymes: SgfI * December 8, 2014 13:48 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3451 278 Size: 53 83 186 936 1915 2468 Fragments arranged by size: 2468 1915 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2984 1937 Size: 1047 4594 Acc65I G'GTAC_C Cuts at: 2962 2962 Size: 5641 AclI AA'CG_TT Cuts at: 1563 3768 4141 1563 Size: 2205 373 3063 Fragments arranged by size: 3063 2205 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2670 3704 5088 5356 1632 Size: 1038 1034 1384 268 1917 Fragments arranged by size: 1917 1384 1038 1034 268 AflII C'TTAA_G Cuts at: 820 1017 2899 820 Size: 197 1882 3562 Fragments arranged by size: 3562 1882 197 AflIII A'CryG_T Cuts at: 1203 4540 5517 1203 Size: 3337 977 1327 Fragments arranged by size: 3337 1327 977 AgeI A'CCGG_T Cuts at: 4472 4472 Size: 5641 AhdI GACnn_n'nnGTC Cuts at: 4370 4370 Size: 5641 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5641 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2932 1184 Size: 1748 3893 AlwNI CAG_nnn'CTG Cuts at: 2693 3384 4956 2693 Size: 691 1572 3378 Fragments arranged by size: 3378 1572 691 ApaI G_GGCC'C Cuts at: 2547 2547 Size: 5641 ApaLI G'TGCA_C Cuts at: 3698 4854 3698 Size: 1156 4485 ApoI r'AATT_y Cuts at: 1493 2030 2166 2679 2950 3176 3328 5437 1493 Size: 537 136 513 271 226 152 2109 1697 Fragments arranged by size: 2109 1697 537 513 271 226 152 136 AseI AT'TA_AT Cuts at: 160 1032 2808 4195 160 Size: 872 1776 1387 1606 Fragments arranged by size: 1776 1606 1387 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5641 AvaI C'yCGr_G Cuts at: 1870 1943 2966 1870 Size: 73 1023 4545 Fragments arranged by size: 4545 1023 73 BamHI G'GATC_C Cuts at: 2971 3338 2971 Size: 367 5274 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2321 2962 4417 618 Size: 325 217 627 534 641 1455 1842 Fragments arranged by size: 1842 1455 641 627 534 325 217 BanII G_rGCy'C Cuts at: 1391 2157 2441 2547 2960 1391 Size: 766 284 106 413 4072 Fragments arranged by size: 4072 766 413 284 106 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4670 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3832 3866 1903 Size: 34 1895 34 3678 Fragments arranged by size: 3678 1895 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3533 4743 3533 Size: 1210 4431 BclI T'GATC_A Cuts at: 1548 1548 Size: 5641 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4252 136 Size: 107 122 71 631 605 2580 1525 Fragments arranged by size: 2580 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5636 5636 Size: 5641 BlpI GC'TnA_GC Cuts at: 2151 3058 2151 Size: 907 4734 Bme1580I G_kGCm'C Cuts at: 1790 2324 2547 3702 4858 1790 Size: 534 223 1155 1156 2573 Fragments arranged by size: 2573 1156 1155 534 223 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5641 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2541 3372 4330 Size: 416 53 83 399 24 1124 831 958 Cuts at: 4330 442 Size: 1753 Fragments arranged by size: 1753 1124 958 831 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5641 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4301 1239 Size: 3062 2579 Bpu10I CC'TnA_GC Cuts at: 2435 2435 Size: 5641 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3766 4631 4929 3766 Size: 865 298 4478 Fragments arranged by size: 4478 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4304 882 Size: 617 2805 2219 Fragments arranged by size: 2805 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3432 493 Size: 711 2228 2702 Fragments arranged by size: 2702 2228 711 BsaBI GATnn'nnATC Cuts at: 5635 5635 Size: 5641 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2595 3448 3830 4465 Size: 53 83 186 936 1062 853 382 635 Cuts at: 4465 275 Size: 1451 Fragments arranged by size: 1451 1062 936 853 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4074 4472 4746 4893 5304 4074 Size: 398 274 147 411 4411 Fragments arranged by size: 4411 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5416 Fragments arranged by size: 5416 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2785 1186 Size: 1599 4042 BseYI C'CCAG_C Cuts at: 4844 5340 4844 Size: 496 5145 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5068 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3091 3852 4880 1540 Size: 275 186 1090 761 1028 2301 Fragments arranged by size: 2301 1090 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2441 3702 3787 4858 2441 Size: 1261 85 1071 3224 Fragments arranged by size: 3224 1261 1071 85 BsmI GAATG_Cn' Cuts at: 3152 3245 3152 Size: 93 5548 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2157 2324 2441 2547 2960 3702 3787 Size: 399 367 167 117 106 413 742 85 Cuts at: 3787 4858 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 413 399 367 167 117 106 85 BspEI T'CCGG_A Cuts at: 5304 5304 Size: 5641 BspHI T'CATG_A Cuts at: 2403 3530 5260 2403 Size: 1127 1730 2784 Fragments arranged by size: 2784 1730 1127 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2996 844 Size: 2152 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3528 1394 Size: 429 1705 3507 Fragments arranged by size: 3507 1705 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2128 2916 4136 4310 65 Size: 1183 880 788 1220 174 1396 Fragments arranged by size: 1396 1220 1183 880 788 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4285 4472 1700 Size: 110 2475 187 2869 Fragments arranged by size: 2869 2475 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5641 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5641 BssSI C'ACGA_G Cuts at: 3701 4713 3701 Size: 1012 4629 BstAPI GCAn_nnn'nTGC Cuts at: 794 2283 2418 794 Size: 1489 135 4017 Fragments arranged by size: 4017 1489 135 BstBI TT'CG_AA Cuts at: 4445 4445 Size: 5641 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5641 BstXI CCAn_nnnn'nTGG Cuts at: 2581 2581 Size: 5641 BstYI r'GATC_y Cuts at: 1972 2971 3338 3723 3740 5192 5278 5290 5636 Size: 999 367 385 17 1452 86 12 346 Cuts at: 5636 1972 Size: 1977 Fragments arranged by size: 1977 1452 999 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5089 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4902 Fragments arranged by size: 4902 683 56 BtsI GCAGTG_nn' Cuts at: 3157 3951 3971 3157 Size: 794 20 4827 Fragments arranged by size: 4827 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5641 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5606 DraI TTT'AAA Cuts at: 2945 2945 Size: 5641 DraIII CAC_nnn'GTG Cuts at: 2145 2145 Size: 5641 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4648 809 Size: 507 3332 1802 Fragments arranged by size: 3332 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2695 3088 3977 Size: 54 1425 50 275 18 865 393 889 Cuts at: 3977 5606 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 865 393 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3088 1537 Size: 275 1276 4090 Fragments arranged by size: 4090 1276 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3571 1353 Size: 2218 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4228 4602 4748 387 Size: 1064 138 2639 374 146 1280 Fragments arranged by size: 2639 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2439 2439 Size: 5641 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2670 3704 4301 5088 5356 1239 Size: 393 1038 1034 597 787 268 1524 Fragments arranged by size: 1524 1038 1034 787 597 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2294 2294 Size: 5641 EcoRI G'AATT_C Cuts at: 2030 2679 2950 3328 2030 Size: 649 271 378 4343 Fragments arranged by size: 4343 649 378 271 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2914 2914 Size: 5641 FspI TGC'GCA Cuts at: 4147 4147 Size: 5641 HaeII r_GCGC'y Cuts at: 1678 4788 1678 Size: 3110 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4282 4314 4356 4388 1373 Size: 32 135 32 2710 32 42 32 2626 Fragments arranged by size: 2710 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2985 3231 669 Size: 988 281 1047 246 3079 Fragments arranged by size: 3079 1047 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5641 HpaI GTT'AAC Cuts at: 3231 3231 Size: 5641 KpnI G_GTAC'C Cuts at: 2966 2966 Size: 5641 MfeI C'AATT_G Cuts at: 3240 3240 Size: 5641 MluI A'CGCG_T Cuts at: 5517 5517 Size: 5641 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4755 4939 1305 Size: 3450 184 2007 Fragments arranged by size: 3450 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2697 10 Size: 54 1425 343 865 2954 Fragments arranged by size: 2954 1425 865 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2348 2402 2612 3599 3958 4117 518 Size: 648 1182 54 210 987 359 159 2042 Fragments arranged by size: 2042 1182 987 648 359 210 159 54 MspA1I CmG'CkG Cuts at: 1606 2428 3057 3734 4882 5127 1606 Size: 822 629 677 1148 245 2120 Fragments arranged by size: 2120 1148 822 677 629 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5089 NdeI CA'TA_TG Cuts at: 387 387 Size: 5641 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5641 NotI GC'GGCC_GC Cuts at: 3088 3088 Size: 5641 NspI r_CATG'y Cuts at: 1132 1229 2281 2999 4544 1132 Size: 97 1052 718 1545 2229 Fragments arranged by size: 2229 1545 1052 718 97 PasI CC'CwG_GG Cuts at: 1348 2621 1348 Size: 1273 4368 PciI A'CATG_T Cuts at: 4540 4540 Size: 5641 PflMI CCAn_nnn'nTGG Cuts at: 1108 2145 2504 2927 1108 Size: 1037 359 423 3822 Fragments arranged by size: 3822 1037 423 359 PmeI GTTT'AAAC Cuts at: 2945 2945 Size: 5641 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3710 3742 5223 5255 3710 Size: 32 1481 32 4096 Fragments arranged by size: 4096 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2738 1613 Size: 1125 4516 PsiI TTA'TAA Cuts at: 3211 3211 Size: 5641 PspOMI G'GGCC_C Cuts at: 2543 2543 Size: 5641 PstI C_TGCA'G Cuts at: 830 2298 2427 2993 830 Size: 1468 129 566 3478 Fragments arranged by size: 3478 1468 566 129 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5641 PvuII CAG'CTG Cuts at: 2428 2428 Size: 5641 SacI G_AGCT'C Cuts at: 2441 2441 Size: 5641 SalI G'TCGA_C Cuts at: 1936 2983 1936 Size: 1047 4594 SbfI CC_TGCA'GG Cuts at: 2993 2993 Size: 5641 ScaI AGT'ACT Cuts at: 3889 5601 3889 Size: 1712 3929 SfcI C'TryA_G Cuts at: 826 1045 2294 2423 2989 4124 4805 4996 826 Size: 219 1249 129 566 1135 681 191 1471 Fragments arranged by size: 1471 1249 1135 681 566 219 191 129 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5641 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5641 SmaI CCC'GGG Cuts at: 1872 2968 1872 Size: 1096 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2899 3745 4646 4908 820 Size: 197 926 956 846 901 262 1553 Fragments arranged by size: 1553 956 926 901 846 262 197 SnaBI TAC'GTA Cuts at: 493 3432 493 Size: 2939 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5641 SphI G_CATG'C Cuts at: 1132 2999 1132 Size: 1867 3774 SspI AAT'ATT Cuts at: 5 52 3565 5 Size: 47 3513 2081 Fragments arranged by size: 3513 2081 47 StuI AGG'CCT Cuts at: 1517 2064 2300 1517 Size: 547 236 4858 Fragments arranged by size: 4858 547 236 StyI C'CwwG_G Cuts at: 513 1065 2059 3080 513 Size: 552 994 1021 3074 Fragments arranged by size: 3074 1021 994 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2434 3668 3685 3838 4023 4468 325 Size: 1255 854 1234 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1234 854 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2175 3887 5599 Size: 274 80 33 51 1443 198 1712 1712 Cuts at: 5599 96 Size: 138 Fragments arranged by size: 1712 1712 1443 274 198 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5601 5633 5601 Size: 32 5609 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5641 XbaI T'CTAG_A Cuts at: 2977 2977 Size: 5641 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5641 XmaI C'CCGG_G Cuts at: 1870 2966 1870 Size: 1096 4545 XmnI GAAnn'nnTTC Cuts at: 2683 3770 2683 Size: 1087 4554 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3449 276 Size: 53 83 186 936 1915 2468 Fragments arranged by size: 2468 1915 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI