FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9708, 341 aa 1>>>pF1KB9708 341 - 341 aa - 341 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.1424+/-0.000394; mu= -17.5667+/- 0.025 mean_var=516.0749+/-107.176, 0's: 0 Z-trim(126.9): 27 B-trim: 1051 in 2/58 Lambda= 0.056457 statistics sampled from 54097 (54146) to 54097 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.635), width: 16 Scan time: 8.340 The best scores are: opt bits E(85289) NP_003568 (OMIM: 604130) undifferentiated embryoni ( 341) 2414 210.1 5.5e-54 >>NP_003568 (OMIM: 604130) undifferentiated embryonic ce (341 aa) initn: 2414 init1: 2414 opt: 2414 Z-score: 1090.2 bits: 210.1 E(85289): 5.5e-54 Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341) 10 20 30 40 50 60 pF1KB9 MLLRPRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGLPVSPGSAQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MLLRPRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGLPVSPGSAQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 TPWSARETELLLGTLLQPAVWRALLLDRRQALPTYRRVSAALAQQQVRRTPAQCRRRYKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 TPWSARETELLLGTLLQPAVWRALLLDRRQALPTYRRVSAALAQQQVRRTPAQCRRRYKF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 LKDKFREAHGQPPGPFDEQIRKLMGLLGDNGRKRPRRRSPGSGRPQRARRPVPNAHAPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LKDKFREAHGQPPGPFDEQIRKLMGLLGDNGRKRPRRRSPGSGRPQRARRPVPNAHAPAP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 SEPDATPLPTARDRDADPTWTLRFSPSPPKSADASPAPGSPPAPAPTALATCIPEDRAPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SEPDATPLPTARDRDADPTWTLRFSPSPPKSADASPAPGSPPAPAPTALATCIPEDRAPV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 RGPGSPPPPPAREDPDSPPGRPEDCAPPPAAPPSLNTALLQTLGHLGDIANILGPLRDQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RGPGSPPPPPAREDPDSPPGRPEDCAPPPAAPPSLNTALLQTLGHLGDIANILGPLRDQL 250 260 270 280 290 300 310 320 330 340 pF1KB9 LTLNQHVEQLRGAFDQTVSLAVGFILGSAAAERGVLRDPCQ ::::::::::::::::::::::::::::::::::::::::: NP_003 LTLNQHVEQLRGAFDQTVSLAVGFILGSAAAERGVLRDPCQ 310 320 330 340 341 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:27:08 2016 done: Tue Nov 8 04:27:09 2016 Total Scan time: 8.340 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]