FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8927, 273 aa 1>>>pF1KB8927 273 - 273 aa - 273 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6357+/-0.000321; mu= 7.0794+/- 0.020 mean_var=209.6442+/-41.391, 0's: 0 Z-trim(123.3): 230 B-trim: 33 in 1/57 Lambda= 0.088579 statistics sampled from 42751 (43005) to 42751 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.504), width: 16 Scan time: 8.920 The best scores are: opt bits E(85289) NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 1882 252.1 8e-67 XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 1882 252.1 8e-67 NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 495 75.0 2.2e-13 NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 468 71.5 2.3e-12 NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 373 59.3 9.2e-09 NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 308 51.0 3e-06 NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 290 48.7 1.4e-05 NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 291 48.9 1.5e-05 XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 290 48.8 1.6e-05 NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 288 48.5 1.8e-05 NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 282 47.6 2.6e-05 NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 283 47.8 2.8e-05 NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 278 47.3 4.9e-05 NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 276 46.9 5.2e-05 NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 272 46.5 7.8e-05 NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 268 46.0 0.00011 NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 265 45.7 0.00016 NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 261 44.9 0.00017 NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 263 45.4 0.00019 XP_006723629 (OMIM: 604612) PREDICTED: homeobox pr ( 202) 257 44.3 0.00021 NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 254 43.8 0.00024 NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 ( 273) 257 44.5 0.00026 NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 ( 277) 257 44.5 0.00026 XP_011538047 (OMIM: 186770) PREDICTED: T-cell leuk ( 269) 256 44.3 0.00028 NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 257 44.6 0.00031 NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 255 44.3 0.00035 NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 253 43.9 0.00035 NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 254 44.1 0.00035 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 44.7 0.00036 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 44.7 0.00036 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 44.7 0.00036 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 257 44.7 0.00036 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 44.7 0.00036 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 257 44.7 0.00036 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 44.7 0.00036 NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 252 43.8 0.00036 XP_016872278 (OMIM: 605955) PREDICTED: homeobox pr ( 277) 252 43.8 0.00041 NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 253 44.0 0.00042 XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 247 43.1 0.00052 NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 249 43.4 0.00052 NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 249 43.4 0.00052 XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 247 43.1 0.00052 NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 ( 239) 247 43.1 0.00058 NP_004088 (OMIM: 600034) homeobox protein EMX1 [Ho ( 290) 247 43.2 0.00066 NP_002720 (OMIM: 604420) hematopoietically-express ( 270) 245 42.9 0.00075 NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 247 43.3 0.00077 XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 243 42.9 0.0012 NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 243 42.9 0.0012 XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 243 42.9 0.0012 XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 243 42.9 0.0012 >>NP_005510 (OMIM: 600647) homeobox protein HMX2 [Homo s (273 aa) initn: 1882 init1: 1882 opt: 1882 Z-score: 1320.7 bits: 252.1 E(85289): 8e-67 Smith-Waterman score: 1882; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273) 10 20 30 40 50 60 pF1KB8 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 ERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 CLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 CLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRV 190 200 210 220 230 240 250 260 270 pF1KB8 PVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY ::::::::::::::::::::::::::::::::: NP_005 PVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY 250 260 270 >>XP_005269800 (OMIM: 600647) PREDICTED: homeobox protei (273 aa) initn: 1882 init1: 1882 opt: 1882 Z-score: 1320.7 bits: 252.1 E(85289): 8e-67 Smith-Waterman score: 1882; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273) 10 20 30 40 50 60 pF1KB8 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 ERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 CLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRV 190 200 210 220 230 240 250 260 270 pF1KB8 PVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY ::::::::::::::::::::::::::::::::: XP_005 PVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY 250 260 270 >>NP_001099044 (OMIM: 613380) homeobox protein HMX3 [Hom (357 aa) initn: 543 init1: 455 opt: 495 Z-score: 361.3 bits: 75.0 E(85289): 2.2e-13 Smith-Waterman score: 555; 41.2% identity (62.2% similar) in 291 aa overlap (7-264:72-353) 10 20 30 pF1KB8 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPRE :.:: : :...:..... : :: NP_001 HRPPPKPQPPPRTLFAPASAAAAAAAAAAAAAKG--ALEGAAGFALSQV---GDLAFPRF 50 60 70 80 90 40 50 60 70 80 90 pF1KB8 PVGWPARKRSLSVSSEEEEPDDGWKAPACFCP-DQHGPK-EQGPKHHPPIPFPCLGTPKG . ::.. .: . :. : .: : . : : :. : . : : :: . NP_001 EI--PAQRFALPAHYLERSP--AWWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRD 100 110 120 130 140 150 100 110 120 130 pF1KB8 SG----GSGPGGLE---RTP---FLSPSHSDFKEEKERLLP--------AGSPSPGSERP : . : : ..: .: : :. .... . : :.. .::.: NP_001 SPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDW 160 170 180 190 200 210 140 150 160 170 180 190 pF1KB8 RDGGA--ERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVK . :. :.. . :::::::::::::.:::::::::::::::::: ::.::.::::::: NP_001 KKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVK 220 230 240 250 260 270 200 210 220 230 240 pF1KB8 TWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLR--------VPVPRS- :::::::::::::.:::::::..::.:: .: .:......: . .::: : NP_001 IWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQ 280 290 300 310 320 330 250 260 270 pF1KB8 --LAFPAPLYYPGSNLSALPLYNLYNKLDY :.:: :.:: .:..:: NP_001 PLLTFPHPVYYSHPVVSSVPLLRPV 340 350 >>NP_061815 (OMIM: 142992,612109) homeobox protein HMX1 (348 aa) initn: 466 init1: 440 opt: 468 Z-score: 342.8 bits: 71.5 E(85289): 2.3e-12 Smith-Waterman score: 485; 39.4% identity (56.6% similar) in 279 aa overlap (34-273:52-326) 10 20 30 40 50 60 pF1KB8 KEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEE---PDDGW :.. . ::.: :. . : NP_061 ENLLAAEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEA 30 40 50 60 70 80 70 80 90 100 110 pF1KB8 KAPACFCPDQHG--PKEQGPKHHPPIPFPCLGT----PKGSGGSGPGGL--ERTPFLSPS .: : . : : :. : ::. . : :. :.. :: : ::: . . :: NP_061 RARALLGPGALGLGPRPP-PGPGPPFALGCGGAARWYPRAHGGYG-GGLSPDTSDRDSPE 90 100 110 120 130 120 130 140 pF1KB8 HSDFKEEKERLLPAGSPSPGS------------------------ERPRDGGAERQA--- .. . : : : :.::. : : .: : . NP_061 TGEEMGRAEGAWPRG-PGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGV 140 150 160 170 180 190 150 160 170 180 190 200 pF1KB8 -GAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKW :. :::::::::::::.:::::::.::::::.::: ::.:::::::::: ::::::::: NP_061 GGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKW 200 210 220 230 240 250 210 220 230 240 250 260 pF1KB8 KRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALPL ::::.::::::... .:: :: .:.....: . . ..: :: :.. :: NP_061 KRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLA-PAAPAPPPPL 260 270 280 290 300 310 270 pF1KB8 YNLYNKLDY .. . : : NP_061 LGFSGALAYPLAAFPAAASVPFLRAQMPGLV 320 330 340 >>NP_057254 (OMIM: 604240) T-cell leukemia homeobox prot (284 aa) initn: 376 init1: 267 opt: 373 Z-score: 278.3 bits: 59.3 E(85289): 9.2e-09 Smith-Waterman score: 374; 36.0% identity (55.2% similar) in 261 aa overlap (19-262:18-262) 10 20 30 40 50 60 pF1KB8 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW :: :..::.: :. : : . :. . .:. . :. NP_057 MEPGMLGPHNLPHHEPISFGIDQILSG-----PETPGGGLGLGRGGQGHGENGAFSGGY 10 20 30 40 50 70 80 90 100 pF1KB8 KAPACF--------CPDQHGPKEQG----PKHHP-PIPFPCLGTPKGSGGSGPGGLERTP .. . . : . : : : :.: :.: : :.: : :: :: NP_057 HGASGYGPAGSLAPLPGSSGVGPGGVIRVPAHRPLPVPPPAGGAPAVPGPSGLGGAGGLA 60 70 80 90 100 110 110 120 130 140 150 160 pF1KB8 FLS-P-SHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLE :. : : . :.:: : :: :..: .: .:: :: :::::: .:: NP_057 GLTFPWMDSGRRFAKDRLTAALSPFSGTRRIGHPYQNRTP-PKRKKPRTSFSRSQVLELE 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB8 STFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTL : ..::.:.::: ::..:..:..::::::::::.::.:: . : :: : ... : NP_057 RRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAER--HRAGRLL 180 190 200 210 220 230 230 240 250 260 270 pF1KB8 VSMPLVFRDS--SLLRVPVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY . . .:. :: :.: : :: .:.: :: NP_057 LHLQ---QDALPRPLRPPLP-----PDPLCLHNSSLFALQNLQPWAEDNKVASVSGLASV 240 250 260 270 280 NP_057 V >>NP_066305 (OMIM: 604640) T-cell leukemia homeobox prot (291 aa) initn: 294 init1: 266 opt: 308 Z-score: 233.3 bits: 51.0 E(85289): 3e-06 Smith-Waterman score: 308; 32.8% identity (56.3% similar) in 247 aa overlap (24-262:42-271) 10 20 30 40 50 pF1KB8 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEE : ::: :. : . .:. :.. . NP_066 PHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRP--GATYPSLPASFAGLGAP 20 30 40 50 60 60 70 80 90 100 pF1KB8 EEPDDGWKAPACFCPDQHGPKEQGPKHHP-----PIPFPCL--GTPKGSGGSGPGGLERT : .... . : . . : :.: : :.: . :. :. :::. NP_066 FEDAGSYSVNLSLAP---AGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLN-F 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB8 PFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGA-ERQAGAAKKKTRTVFSRSQVYQLE :.. :. . :.:. :.. .: . : : . .. .:: :: ::: :. .:: NP_066 PWMESSR---RFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELE 130 140 150 160 170 180 170 180 190 200 210 220 pF1KB8 STFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTL . : ..::.:.::: ::.::..:..::::::::::.::.:: . : :: . .:: : NP_066 KRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQ-QASRLML 190 200 210 220 230 240 230 240 250 260 270 pF1KB8 VSMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY . .:. : . :. : :: .:.: :: NP_066 QLQHDAFQKS------LNDSIQ-PDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSLV 250 260 270 280 290 >>NP_002440 (OMIM: 123101,168500,168550,604757) homeobox (267 aa) initn: 292 init1: 237 opt: 290 Z-score: 221.3 bits: 48.7 E(85289): 1.4e-05 Smith-Waterman score: 290; 34.9% identity (54.5% similar) in 255 aa overlap (29-269:23-265) 10 20 30 40 50 60 pF1KB8 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW ::. .: : :..: ..::: : . NP_002 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEG-AAEERRVKVSSL---P---F 10 20 30 40 70 80 90 100 110 pF1KB8 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSG------PGGLERTPFLSPS-H .. : . :.. ::: .: : .: : :: : . :: . : . NP_002 SVEA-LMSDKKPPKEASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVK-PFETASVK 50 60 70 80 90 100 120 130 140 150 160 170 pF1KB8 SDFKEEKERLL--PAG-SPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDM :. .:. . :. :: : : ... ...: :: :. ::. :: : . NP_002 SENSEDGAAWMQEPGRYSPPPRHMSPTTCTLRKH--KTNRKPRTPFTTSQLLALERKFRQ 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB8 KRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPL :.::: .::: ..:::.::::::: :::::: : :: :::: .:: :. . :. : NP_002 KQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMA-AKPMLPSSFSL 170 180 190 200 210 220 240 250 260 270 pF1KB8 VFRDSSLLRVPVPRSLAFP--AP-LYYPGSNLSALPL-YNLYNKLDY : :: :.. . ..: : : : .: : :. :..:. NP_002 PFPISSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS 230 240 250 260 >>NP_001180 (OMIM: 602183,613330) homeobox protein Nkx-3 (333 aa) initn: 325 init1: 242 opt: 291 Z-score: 220.8 bits: 48.9 E(85289): 1.5e-05 Smith-Waterman score: 306; 31.3% identity (54.3% similar) in 265 aa overlap (1-255:97-314) 10 20 30 pF1KB8 MGSKEDAGKGCPAAGGVSSFTIQSILGGGP .. .... . : : :.:. .. ::. NP_001 EDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASG---AGLAGGSL 70 80 90 100 110 120 40 50 60 70 80 pF1KB8 SEAPREPVGWPARKRSLSVSSEEEEPDDGWKAPACFCPDQHGPKEQ----GPKHHPPIPF : .: :. . . : . ::: . . . ...:. . ::. . NP_001 S------LGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRG-AHVSA 130 140 150 160 170 90 100 110 120 130 140 pF1KB8 PCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAG : :. :.:::::.:. .::.: :.. .:: NP_001 LCSGAG-GGGGSGPAGVA------------EEEEE---------PAAPKPR--------- 180 190 200 150 160 170 180 190 200 pF1KB8 AAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKR ::..:..::..::..:: :. .::::. ::: ::.::.::::::: :::::: : :: NP_001 --KKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 210 220 230 240 250 260 210 220 230 240 250 260 pF1KB8 -QLSAELEAANMAHASAQTLVSMPLVFRDSSLLRVP-----VPRSLAFPAPLYYPGSNLS :..:.: .: : : :.. .. ::.. .: : : . ::: NP_001 RQMAADL----LASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLP 270 280 290 300 310 270 pF1KB8 ALPLYNLYNKLDY NP_001 GWALSTCAAAAGTQ 320 330 >>XP_011538046 (OMIM: 186770) PREDICTED: T-cell leukemia (342 aa) initn: 353 init1: 261 opt: 290 Z-score: 220.0 bits: 48.8 E(85289): 1.6e-05 Smith-Waterman score: 314; 32.7% identity (55.4% similar) in 269 aa overlap (2-262:75-318) 10 20 pF1KB8 MGSKEDAGKGCPAAGG--------VSSFTIQ :. .: : ::.:: ..:.... XP_011 YGLGCLVGGAYTYGGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVN 50 60 70 80 90 100 30 40 50 60 70 80 pF1KB8 SILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGWKAPACFCPDQHGPKEQGPKHHPP :.:::. : : . .::... . : : : :. : : : XP_011 MALAGGPG--PGGGGGSSGGAGALSAAGVIRVPAHRPLAGAVAHPQ---PLATG---LPT 110 120 130 140 150 90 100 110 120 130 140 pF1KB8 IPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAER .: ..: : .. :: :.. .:. . :.:. : :: ..: .: XP_011 VP----SVPAMPGVNNLTGLT-FPWM---ESNRRYTKDRFTVALSPFTVTRRIGHPYQNR 160 170 180 190 200 150 160 170 180 190 200 pF1KB8 QAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNK ::: :: :.: :. .::. : ..::.:.::: ::..:..:..::::::::::.: XP_011 TP-PKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTK 210 220 230 240 250 260 210 220 230 240 250 260 pF1KB8 WKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALP :.:: .:: . :. .:. : . .:. : : :.: . :: .:.: :: XP_011 WRRQ-TAEEREAERQQANRILLQLQQEAFQKS--LAQPLPAD-----PLCVHNSSLFALQ 270 280 290 300 310 270 pF1KB8 LYNLYNKLDY XP_011 NLQPWSDDSTKITSVTSVASACE 320 330 340 >>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa) initn: 311 init1: 225 opt: 288 Z-score: 219.3 bits: 48.5 E(85289): 1.8e-05 Smith-Waterman score: 308; 35.2% identity (57.3% similar) in 213 aa overlap (67-251:25-233) 40 50 60 70 80 90 pF1KB8 PVGWPARKRSLSVSSEEEEPDDGWKAPACFCP--DQHGPKEQGPKHHPPIPFPCLGTPKG :: . : ...:.. . . . :.: NP_001 MLLSPVTSTPFSVKDILRLERERSCPAASPHPRVRKSPENFQYLRMD--AEPRG 10 20 30 40 50 100 110 120 130 pF1KB8 S--GGSGPGGLERT-----PFLSPSHSDFKEEKERL------LPAGSPSPGSER-P---- : ..: :: .: : .: .. .. . ::. : :.:: :. : : NP_001 SEVHNAGGGGGDRKLDGSEPPGGPCEAVLEMDAERMGEPQPGLNAASPLGGGTRVPERGV 60 70 80 90 100 110 140 150 160 170 180 pF1KB8 -------RDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLT : : .:. . ..: :..::..:: :: : ..::::. :: :::.:::: NP_001 GNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLT 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB8 ETQVKTWFQNRRNKWKRQLSAE-LEAANMAHASAQTLVSMPLVFRDSSLLRVPVPRSLAF :::: :::::: : ::: . . :: :. : . :..:.. ::.. : : . :: NP_001 STQVKIWFQNRRYKCKRQRQDKSLELAG--HPLTPRRVAVPVLVRDGKPCLGPGPGAPAF 180 190 200 210 220 230 250 260 270 pF1KB8 PAPLYYPGSNLSALPLYNLYNKLDY :.: NP_001 PSPYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHGGQNATPQGH 240 250 260 270 280 290 273 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:59:14 2016 done: Sun Nov 6 04:59:16 2016 Total Scan time: 8.920 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]