(Circular) (Six-base) MAPSORT of: pFN21AE9407.seq Check: 3276 from: 1 to: 5704 pFN21AE9407 5704 bp With 182 enzymes: SgfI * December 28, 2011 15:24 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3514 278 Size: 53 83 186 936 1978 2468 Fragments arranged by size: 2468 1978 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3047 1937 Size: 1110 4594 Acc65I G'GTAC_C Cuts at: 3025 3025 Size: 5704 AclI AA'CG_TT Cuts at: 1563 3831 4204 1563 Size: 2268 373 3063 Fragments arranged by size: 3063 2268 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2315 3767 5151 5419 1632 Size: 683 1452 1384 268 1917 Fragments arranged by size: 1917 1452 1384 683 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5507 AflIII A'CryG_T Cuts at: 1203 2019 2021 2307 4603 5580 1203 Size: 816 2 286 2296 977 1327 Fragments arranged by size: 2296 1327 977 816 286 2 AgeI A'CCGG_T Cuts at: 4535 4535 Size: 5704 AhdI GACnn_n'nnGTC Cuts at: 4433 4433 Size: 5704 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5704 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2360 1184 Size: 1176 4528 AlwNI CAG_nnn'CTG Cuts at: 3447 5019 3447 Size: 1572 4132 ApaLI G'TGCA_C Cuts at: 3761 4917 3761 Size: 1156 4548 ApoI r'AATT_y Cuts at: 1493 2854 3013 3239 3391 5500 1493 Size: 1361 159 226 152 2109 1697 Fragments arranged by size: 2109 1697 1361 226 159 152 AseI AT'TA_AT Cuts at: 160 1032 4258 160 Size: 872 3226 1606 Fragments arranged by size: 3226 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5704 AvaI C'yCGr_G Cuts at: 1870 1943 3029 1870 Size: 73 1086 4545 Fragments arranged by size: 4545 1086 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2008 2041 2008 Size: 33 5671 BamHI G'GATC_C Cuts at: 3034 3401 3034 Size: 367 5337 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3025 4480 618 Size: 325 217 627 1238 1455 1842 Fragments arranged by size: 1842 1455 1238 627 325 217 BanII G_rGCy'C Cuts at: 1391 3023 1391 Size: 1632 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2630 2911 928 Size: 971 731 281 3721 Fragments arranged by size: 3721 971 731 281 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3895 3929 1903 Size: 34 50 34 1874 34 3678 Fragments arranged by size: 3678 1874 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3596 4806 3596 Size: 1210 4494 BclI T'GATC_A Cuts at: 1548 2433 1548 Size: 885 4819 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2263 4315 136 Size: 107 122 71 631 605 591 2052 1525 Fragments arranged by size: 2052 1525 631 605 591 122 107 71 BglII A'GATC_T Cuts at: 2665 5699 2665 Size: 3034 2670 BlpI GC'TnA_GC Cuts at: 3121 3121 Size: 5704 Bme1580I G_kGCm'C Cuts at: 1790 3765 4921 1790 Size: 1975 1156 2573 Fragments arranged by size: 2573 1975 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5704 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2539 2864 3435 Size: 416 53 83 399 24 1122 325 571 Cuts at: 3435 4393 442 Size: 958 1753 Fragments arranged by size: 1753 1122 958 571 416 399 325 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5704 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4364 1239 Size: 3125 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3829 4694 4992 3829 Size: 865 298 4541 Fragments arranged by size: 4541 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2108 2276 4367 882 Size: 617 609 168 2091 2219 Fragments arranged by size: 2219 2091 617 609 168 BsaAI yAC'GTr Cuts at: 493 1204 2022 3495 493 Size: 711 818 1473 2702 Fragments arranged by size: 2702 1473 818 711 BsaBI GATnn'nnATC Cuts at: 2649 5698 2649 Size: 3049 2655 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3511 3893 4528 275 Size: 53 83 186 936 1978 382 635 1451 Fragments arranged by size: 1978 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4137 4535 4809 4956 5367 4137 Size: 398 274 147 411 4474 Fragments arranged by size: 4474 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5479 Fragments arranged by size: 5479 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2456 1186 Size: 1270 4434 BseYI C'CCAG_C Cuts at: 4907 5403 4907 Size: 496 5208 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2730 1163 Size: 573 994 4137 Fragments arranged by size: 4137 994 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3154 3915 4943 1540 Size: 275 186 1153 761 1028 2301 Fragments arranged by size: 2301 1153 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3765 3850 4921 3765 Size: 85 1071 4548 Fragments arranged by size: 4548 1071 85 BsmI GAATG_Cn' Cuts at: 3215 3308 3215 Size: 93 5611 Bsp1286I G_dGCh'C Cuts at: 1391 1790 3023 3765 3850 4921 1391 Size: 399 1233 742 85 1071 2174 Fragments arranged by size: 2174 1233 1071 742 399 85 BspEI T'CCGG_A Cuts at: 5367 5367 Size: 5704 BspHI T'CATG_A Cuts at: 2248 3593 5323 2248 Size: 1345 1730 2629 Fragments arranged by size: 2629 1730 1345 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3059 844 Size: 2215 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3591 1394 Size: 429 1768 3507 Fragments arranged by size: 3507 1768 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2190 2418 4199 4373 65 Size: 1183 942 228 1781 174 1396 Fragments arranged by size: 1781 1396 1183 942 228 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4348 4535 1700 Size: 110 2538 187 2869 Fragments arranged by size: 2869 2538 187 110 BsrGI T'GTAC_A Cuts at: 96 2409 96 Size: 2313 3391 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5704 BssSI C'ACGA_G Cuts at: 3764 4776 3764 Size: 1012 4692 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5704 BstBI TT'CG_AA Cuts at: 4508 4508 Size: 5704 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5704 BstXI CCAn_nnnn'nTGG Cuts at: 2669 2669 Size: 5704 BstYI r'GATC_y Cuts at: 1972 2229 2515 2665 3034 3401 3786 3803 5255 Size: 257 286 150 369 367 385 17 1452 Cuts at: 5255 5341 5353 5699 1972 Size: 86 12 346 1977 Fragments arranged by size: 1977 1452 385 369 367 346 286 257 150 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2655 513 Size: 552 1590 3562 Fragments arranged by size: 3562 1590 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4965 Fragments arranged by size: 4965 683 56 BtsI GCAGTG_nn' Cuts at: 2079 2636 3220 4014 4034 2079 Size: 557 584 794 20 3749 Fragments arranged by size: 3749 794 584 557 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5704 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5669 DraI TTT'AAA Cuts at: 3008 3008 Size: 5704 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4711 809 Size: 507 3395 1802 Fragments arranged by size: 3395 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2255 3151 4040 Size: 54 1425 50 275 18 425 896 889 Cuts at: 4040 5669 8 Size: 1629 43 Fragments arranged by size: 1629 1425 896 889 425 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3151 1537 Size: 275 1339 4090 Fragments arranged by size: 4090 1339 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3634 1353 Size: 2281 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4291 4665 4811 387 Size: 1064 138 2702 374 146 1280 Fragments arranged by size: 2702 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2315 3767 4364 5151 5419 1239 Size: 393 683 1452 597 787 268 1524 Fragments arranged by size: 1524 1452 787 683 597 393 268 EcoRI G'AATT_C Cuts at: 2854 3013 3391 2854 Size: 159 378 5167 Fragments arranged by size: 5167 378 159 FspI TGC'GCA Cuts at: 4210 4210 Size: 5704 HaeII r_GCGC'y Cuts at: 1678 4851 1678 Size: 3173 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2471 2503 4345 4377 4419 Size: 32 135 32 899 32 1842 32 42 Cuts at: 4419 4451 1373 Size: 32 2626 Fragments arranged by size: 2626 1842 899 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2305 2536 3048 3294 669 Size: 988 281 367 231 512 246 3079 Fragments arranged by size: 3079 988 512 367 281 246 231 HindIII A'AGCT_T Cuts at: 748 748 Size: 5704 HpaI GTT'AAC Cuts at: 3294 3294 Size: 5704 KpnI G_GTAC'C Cuts at: 3029 3029 Size: 5704 MfeI C'AATT_G Cuts at: 3303 3303 Size: 5704 MluI A'CGCG_T Cuts at: 5580 5580 Size: 5704 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2965 4818 5002 1305 Size: 1660 1853 184 2007 Fragments arranged by size: 2007 1853 1660 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2257 10 Size: 54 1425 343 425 3457 Fragments arranged by size: 3457 1425 425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2093 2342 3662 4021 4180 518 Size: 648 927 249 1320 359 159 2042 Fragments arranged by size: 2042 1320 927 648 359 249 159 MspA1I CmG'CkG Cuts at: 1606 3120 3797 4945 5190 1606 Size: 1514 677 1148 245 2120 Fragments arranged by size: 2120 1514 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2655 513 Size: 552 1590 3562 Fragments arranged by size: 3562 1590 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5704 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5704 NotI GC'GGCC_GC Cuts at: 3151 3151 Size: 5704 NspI r_CATG'y Cuts at: 1132 1229 2281 2311 3062 4607 1132 Size: 97 1052 30 751 1545 2229 Fragments arranged by size: 2229 1545 1052 751 97 30 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5704 PciI A'CATG_T Cuts at: 2307 4603 2307 Size: 2296 3408 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5704 PmeI GTTT'AAAC Cuts at: 3008 3008 Size: 5704 PmlI CAC'GTG Cuts at: 2022 2022 Size: 5704 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3773 3805 5286 5318 3773 Size: 32 1481 32 4159 Fragments arranged by size: 4159 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5704 PsiI TTA'TAA Cuts at: 3274 3274 Size: 5704 PstI C_TGCA'G Cuts at: 830 3056 830 Size: 2226 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5704 SalI G'TCGA_C Cuts at: 1936 3046 1936 Size: 1110 4594 SbfI CC_TGCA'GG Cuts at: 3056 3056 Size: 5704 ScaI AGT'ACT Cuts at: 3952 5664 3952 Size: 1712 3992 SfcI C'TryA_G Cuts at: 826 1045 3052 4187 4868 5059 826 Size: 219 2007 1135 681 191 1471 Fragments arranged by size: 2007 1471 1135 681 219 191 SfiI GGCCn_nnn'nGGCC Cuts at: 2263 2263 Size: 5704 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5704 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5704 SmaI CCC'GGG Cuts at: 1872 3031 1872 Size: 1159 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3808 4709 4971 820 Size: 197 926 1865 901 262 1553 Fragments arranged by size: 1865 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3495 493 Size: 3002 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5704 SphI G_CATG'C Cuts at: 1132 3062 1132 Size: 1930 3774 SspI AAT'ATT Cuts at: 5 52 2820 3628 5 Size: 47 2768 808 2081 Fragments arranged by size: 2768 2081 808 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5704 StyI C'CwwG_G Cuts at: 513 1065 2655 3143 513 Size: 552 1590 488 3074 Fragments arranged by size: 3074 1590 552 488 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3731 3748 3901 4086 4531 325 Size: 1255 2151 17 153 185 445 1498 Fragments arranged by size: 2151 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2409 2452 3950 Size: 274 80 33 51 1443 432 43 1498 Cuts at: 3950 5662 96 Size: 1712 138 Fragments arranged by size: 1712 1498 1443 432 274 138 80 51 43 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5664 5696 5664 Size: 32 5672 Tth111I GACn'n_nGTC Cuts at: 1316 2870 1316 Size: 1554 4150 XbaI T'CTAG_A Cuts at: 3040 3040 Size: 5704 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2509 2509 Size: 5704 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5704 XmaI C'CCGG_G Cuts at: 1870 3029 1870 Size: 1159 4545 XmnI GAAnn'nnTTC Cuts at: 3833 3833 Size: 5704 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3512 276 Size: 53 83 186 936 1978 2468 Fragments arranged by size: 2468 1978 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PmlI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SfiI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfoI SrfI SwaI