Result of FASTA (omim) for
pFN21AE6177
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6177, 108 aa
1>>>pF1KE6177 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9272+/-0.000323; mu= 12.2781+/- 0.020
mean_var=62.9978+/-12.582, 0's: 0 Z-trim(116.4): 26 B-trim: 352 in 1/50
Lambda= 0.161589
statistics sampled from 27452 (27471) to 27452 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.322), width: 16
Scan time: 3.080
The best scores are: opt bits E(85289)
NP_001003696 (OMIM: 603152) ATP synthase-coupling ( 108) 696 170.0 6.7e-43
NP_001676 (OMIM: 603152) ATP synthase-coupling fac ( 108) 696 170.0 6.7e-43
NP_001003703 (OMIM: 603152) ATP synthase-coupling ( 108) 696 170.0 6.7e-43
NP_001307195 (OMIM: 603152) ATP synthase-coupling ( 108) 696 170.0 6.7e-43
NP_001307196 (OMIM: 603152) ATP synthase-coupling ( 108) 696 170.0 6.7e-43
NP_001003697 (OMIM: 603152) ATP synthase-coupling ( 108) 696 170.0 6.7e-43
NP_001003701 (OMIM: 603152) ATP synthase-coupling ( 116) 696 170.0 7.1e-43
>>NP_001003696 (OMIM: 603152) ATP synthase-coupling fact (108 aa)
initn: 696 init1: 696 opt: 696 Z-score: 891.2 bits: 170.0 E(85289): 6.7e-43
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE6 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
10 20 30 40 50 60
70 80 90 100
pF1KE6 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
70 80 90 100
>>NP_001676 (OMIM: 603152) ATP synthase-coupling factor (108 aa)
initn: 696 init1: 696 opt: 696 Z-score: 891.2 bits: 170.0 E(85289): 6.7e-43
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE6 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
10 20 30 40 50 60
70 80 90 100
pF1KE6 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
70 80 90 100
>>NP_001003703 (OMIM: 603152) ATP synthase-coupling fact (108 aa)
initn: 696 init1: 696 opt: 696 Z-score: 891.2 bits: 170.0 E(85289): 6.7e-43
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE6 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
10 20 30 40 50 60
70 80 90 100
pF1KE6 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
70 80 90 100
>>NP_001307195 (OMIM: 603152) ATP synthase-coupling fact (108 aa)
initn: 696 init1: 696 opt: 696 Z-score: 891.2 bits: 170.0 E(85289): 6.7e-43
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE6 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
10 20 30 40 50 60
70 80 90 100
pF1KE6 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
70 80 90 100
>>NP_001307196 (OMIM: 603152) ATP synthase-coupling fact (108 aa)
initn: 696 init1: 696 opt: 696 Z-score: 891.2 bits: 170.0 E(85289): 6.7e-43
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE6 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
10 20 30 40 50 60
70 80 90 100
pF1KE6 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
70 80 90 100
>>NP_001003697 (OMIM: 603152) ATP synthase-coupling fact (108 aa)
initn: 696 init1: 696 opt: 696 Z-score: 891.2 bits: 170.0 E(85289): 6.7e-43
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE6 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
10 20 30 40 50 60
70 80 90 100
pF1KE6 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
70 80 90 100
>>NP_001003701 (OMIM: 603152) ATP synthase-coupling fact (116 aa)
initn: 696 init1: 696 opt: 696 Z-score: 890.7 bits: 170.0 E(85289): 7.1e-43
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:9-116)
10 20 30 40 50
pF1KE6 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKS
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHCDGGISMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKS
10 20 30 40 50 60
60 70 80 90 100
pF1KE6 KRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
70 80 90 100 110
108 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:06:43 2016 done: Tue Nov 8 10:06:43 2016
Total Scan time: 3.080 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]