FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9741, 517 aa 1>>>pF1KB9741 517 - 517 aa - 517 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3440+/-0.000307; mu= 18.6939+/- 0.019 mean_var=77.9942+/-16.034, 0's: 0 Z-trim(117.4): 27 B-trim: 1756 in 2/55 Lambda= 0.145226 statistics sampled from 29391 (29421) to 29391 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.345), width: 16 Scan time: 10.680 The best scores are: opt bits E(85289) NP_055091 (OMIM: 616104) recombining binding prote ( 517) 3532 749.5 5.5e-216 NP_001268378 (OMIM: 616104) recombining binding pr ( 516) 3513 745.5 8.6e-215 NP_001268377 (OMIM: 616104) recombining binding pr ( 471) 2903 617.7 2.4e-176 XP_011526823 (OMIM: 616104) PREDICTED: recombining ( 455) 2810 598.2 1.7e-170 XP_011526825 (OMIM: 616104) PREDICTED: recombining ( 412) 2329 497.4 3.4e-140 XP_011526824 (OMIM: 616104) PREDICTED: recombining ( 436) 2329 497.4 3.6e-140 NP_976028 (OMIM: 147183,614814) recombining bindin ( 485) 1381 298.8 2.4e-80 NP_976029 (OMIM: 147183,614814) recombining bindin ( 486) 1381 298.8 2.4e-80 XP_016863662 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80 XP_016863663 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80 XP_011512142 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80 XP_016863664 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80 XP_005248218 (OMIM: 147183,614814) PREDICTED: reco ( 486) 1381 298.8 2.4e-80 NP_056958 (OMIM: 147183,614814) recombining bindin ( 487) 1381 298.8 2.4e-80 NP_005340 (OMIM: 147183,614814) recombining bindin ( 500) 1381 298.8 2.5e-80 XP_016863661 (OMIM: 147183,614814) PREDICTED: reco ( 500) 1381 298.8 2.5e-80 XP_016863660 (OMIM: 147183,614814) PREDICTED: reco ( 501) 1381 298.8 2.5e-80 XP_016863659 (OMIM: 147183,614814) PREDICTED: reco ( 506) 1381 298.8 2.5e-80 >>NP_055091 (OMIM: 616104) recombining binding protein s (517 aa) initn: 3532 init1: 3532 opt: 3532 Z-score: 3998.7 bits: 749.5 E(85289): 5.5e-216 Smith-Waterman score: 3532; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517) 10 20 30 40 50 60 pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS 430 440 450 460 470 480 490 500 510 pF1KB9 VRPGHPGVPEPATDADALLESIHQEFTRTNFHLFIQT ::::::::::::::::::::::::::::::::::::: NP_055 VRPGHPGVPEPATDADALLESIHQEFTRTNFHLFIQT 490 500 510 >>NP_001268378 (OMIM: 616104) recombining binding protei (516 aa) initn: 3511 init1: 2896 opt: 3513 Z-score: 3977.2 bits: 745.5 E(85289): 8.6e-215 Smith-Waterman score: 3513; 99.8% identity (99.8% similar) in 517 aa overlap (1-517:1-516) 10 20 30 40 50 60 pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAETMY-SPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS 430 440 450 460 470 490 500 510 pF1KB9 VRPGHPGVPEPATDADALLESIHQEFTRTNFHLFIQT ::::::::::::::::::::::::::::::::::::: NP_001 VRPGHPGVPEPATDADALLESIHQEFTRTNFHLFIQT 480 490 500 510 >>NP_001268377 (OMIM: 616104) recombining binding protei (471 aa) initn: 2903 init1: 2903 opt: 2903 Z-score: 3287.0 bits: 617.7 E(85289): 2.4e-176 Smith-Waterman score: 2903; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427) 10 20 30 40 50 60 pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS ::::::: NP_001 EAETMYRYGVEPAVPGVRGAGRGGLLQRLALAARSHHNPHEPGARRRALLP 430 440 450 460 470 >>XP_011526823 (OMIM: 616104) PREDICTED: recombining bin (455 aa) initn: 2810 init1: 2810 opt: 2810 Z-score: 3181.9 bits: 598.2 E(85289): 1.7e-170 Smith-Waterman score: 2810; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414) 10 20 30 40 50 60 pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV :::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKEPAVPG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 EAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYS XP_011 VRGAGRGGLLQRLALAARSHHNPHEPGARRRALLP 430 440 450 >>XP_011526825 (OMIM: 616104) PREDICTED: recombining bin (412 aa) initn: 2354 init1: 2329 opt: 2329 Z-score: 2637.9 bits: 497.4 E(85289): 3.4e-140 Smith-Waterman score: 2329; 99.4% identity (99.7% similar) in 343 aa overlap (1-343:1-343) 10 20 30 40 50 60 pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT :::::::::::::::::::::::::::::::::::::::: .: XP_011 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQHQPGVYPGAGHSGASHQHPR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV XP_011 AERRGRRGHAGAPRRELPRGAQGARGPWCAWCRTWRPSAATGAGCALPSQSP 370 380 390 400 410 >>XP_011526824 (OMIM: 616104) PREDICTED: recombining bin (436 aa) initn: 2329 init1: 2329 opt: 2329 Z-score: 2637.5 bits: 497.4 E(85289): 3.6e-140 Smith-Waterman score: 2329; 99.4% identity (99.7% similar) in 343 aa overlap (1-343:1-343) 10 20 30 40 50 60 pF1KB9 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDPAGAADPSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SARQWAAFTLHLADGHSAQGDFPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWT :::::::::::::::::::::::::::::::::::::::: .: XP_011 LDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQHQPGVYPGAGHSGASHQHPR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 IIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDV XP_011 AERRGRRGHAGAPRRELPRGAQGVVWGRGGRNHVQEPAVPGVRGAGRGGLLQRLALAARS 370 380 390 400 410 420 >>NP_976028 (OMIM: 147183,614814) recombining binding pr (485 aa) initn: 1356 init1: 682 opt: 1381 Z-score: 1563.4 bits: 298.8 E(85289): 2.4e-80 Smith-Waterman score: 1648; 54.8% identity (78.1% similar) in 438 aa overlap (47-483:11-437) 20 30 40 50 60 70 pF1KB9 THLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVRILHAKV : . : ..: :... .::: :::::: NP_976 MGGCRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKV 10 20 30 40 80 90 100 110 120 130 pF1KB9 AQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATET :::::::::::::::::::: : ::. : : . .: :...:. . : : NP_976 AQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQEM 50 60 70 80 90 140 150 160 170 180 190 pF1KB9 QKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPS :.::.: .... ::::::::.:::::: : ... .. ..:.: :. :::::::: NP_976 QQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 100 110 120 130 140 150 200 210 220 230 240 250 pF1KB9 QKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGH .:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:: .:: : NP_976 KKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDD 160 170 180 190 200 210 260 270 280 290 300 310 pF1KB9 SAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAF ..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:.:::::::: NP_976 ESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF 220 230 240 250 260 270 320 330 340 350 360 370 pF1KB9 QFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTESVEFSFSTSL . . ::::. :...::::.::::: :. ..::.. ::::.:...:..: .. NP_976 YLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGM 280 290 300 310 320 380 390 400 410 420 430 pF1KB9 ACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCV . .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::: .:..:: NP_976 GPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCV 330 340 350 360 370 380 440 450 460 470 480 490 pF1KB9 VPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPEPATDA :::..:: :::.: :. .:..::: ::..: ....:::::: . :: NP_976 VPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRAN 390 400 410 420 430 440 500 510 pF1KB9 DALLESIHQEFTRTNFHLFIQT NP_976 SSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS 450 460 470 480 >>NP_976029 (OMIM: 147183,614814) recombining binding pr (486 aa) initn: 1356 init1: 682 opt: 1381 Z-score: 1563.4 bits: 298.8 E(85289): 2.4e-80 Smith-Waterman score: 1648; 54.8% identity (78.1% similar) in 438 aa overlap (47-483:12-438) 20 30 40 50 60 70 pF1KB9 THLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVRILHAKV : . : ..: :... .::: :::::: NP_976 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKV 10 20 30 40 80 90 100 110 120 130 pF1KB9 AQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATET :::::::::::::::::::: : ::. : : . .: :...:. . : : NP_976 AQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQEM 50 60 70 80 90 140 150 160 170 180 190 pF1KB9 QKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPS :.::.: .... ::::::::.:::::: : ... .. ..:.: :. :::::::: NP_976 QQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 100 110 120 130 140 150 200 210 220 230 240 250 pF1KB9 QKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGH .:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:: .:: : NP_976 KKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDD 160 170 180 190 200 210 260 270 280 290 300 310 pF1KB9 SAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAF ..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:.:::::::: NP_976 ESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF 220 230 240 250 260 270 320 330 340 350 360 370 pF1KB9 QFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTESVEFSFSTSL . . ::::. :...::::.::::: :. ..::.. ::::.:...:..: .. NP_976 YLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGM 280 290 300 310 320 330 380 390 400 410 420 430 pF1KB9 ACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCV . .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::: .:..:: NP_976 GPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCV 340 350 360 370 380 390 440 450 460 470 480 490 pF1KB9 VPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPEPATDA :::..:: :::.: :. .:..::: ::..: ....:::::: . :: NP_976 VPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRAN 400 410 420 430 440 450 500 510 pF1KB9 DALLESIHQEFTRTNFHLFIQT NP_976 SSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS 460 470 480 >>XP_016863662 (OMIM: 147183,614814) PREDICTED: recombin (486 aa) initn: 1356 init1: 682 opt: 1381 Z-score: 1563.4 bits: 298.8 E(85289): 2.4e-80 Smith-Waterman score: 1648; 54.8% identity (78.1% similar) in 438 aa overlap (47-483:12-438) 20 30 40 50 60 70 pF1KB9 THLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVRILHAKV : . : ..: :... .::: :::::: XP_016 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKV 10 20 30 40 80 90 100 110 120 130 pF1KB9 AQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATET :::::::::::::::::::: : ::. : : . .: :...:. . : : XP_016 AQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQEM 50 60 70 80 90 140 150 160 170 180 190 pF1KB9 QKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPS :.::.: .... ::::::::.:::::: : ... .. ..:.: :. :::::::: XP_016 QQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 100 110 120 130 140 150 200 210 220 230 240 250 pF1KB9 QKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGH .:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:: .:: : XP_016 KKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDD 160 170 180 190 200 210 260 270 280 290 300 310 pF1KB9 SAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAF ..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:.:::::::: XP_016 ESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF 220 230 240 250 260 270 320 330 340 350 360 370 pF1KB9 QFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTESVEFSFSTSL . . ::::. :...::::.::::: :. ..::.. ::::.:...:..: .. XP_016 YLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGM 280 290 300 310 320 330 380 390 400 410 420 430 pF1KB9 ACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCV . .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::: .:..:: XP_016 GPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCV 340 350 360 370 380 390 440 450 460 470 480 490 pF1KB9 VPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPEPATDA :::..:: :::.: :. .:..::: ::..: ....:::::: . :: XP_016 VPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRAN 400 410 420 430 440 450 500 510 pF1KB9 DALLESIHQEFTRTNFHLFIQT XP_016 SSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS 460 470 480 >>XP_016863663 (OMIM: 147183,614814) PREDICTED: recombin (486 aa) initn: 1356 init1: 682 opt: 1381 Z-score: 1563.4 bits: 298.8 E(85289): 2.4e-80 Smith-Waterman score: 1648; 54.8% identity (78.1% similar) in 438 aa overlap (47-483:12-438) 20 30 40 50 60 70 pF1KB9 THLSLQDRSEMQLQSEADRRSLPGTWTRSSPEHTTILRGGVRRCLQQQCEQTVRILHAKV : . : ..: :... .::: :::::: XP_016 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKV 10 20 30 40 80 90 100 110 120 130 pF1KB9 AQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSATET :::::::::::::::::::: : ::. : : . .: :...:. . : : XP_016 AQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQEM 50 60 70 80 90 140 150 160 170 180 190 pF1KB9 QKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISKPS :.::.: .... ::::::::.:::::: : ... .. ..:.: :. :::::::: XP_016 QQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 100 110 120 130 140 150 200 210 220 230 240 250 pF1KB9 QKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGH .:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:: .:: : XP_016 KKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDD 160 170 180 190 200 210 260 270 280 290 300 310 pF1KB9 SAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAF ..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:.:::::::: XP_016 ESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF 220 230 240 250 260 270 320 330 340 350 360 370 pF1KB9 QFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTESVEFSFSTSL . . ::::. :...::::.::::: :. ..::.. ::::.:...:..: .. XP_016 YLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGM 280 290 300 310 320 330 380 390 400 410 420 430 pF1KB9 ACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCV . .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::: .:..:: XP_016 GPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCV 340 350 360 370 380 390 440 450 460 470 480 490 pF1KB9 VPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHPGVPEPATDA :::..:: :::.: :. .:..::: ::..: ....:::::: . :: XP_016 VPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRAN 400 410 420 430 440 450 500 510 pF1KB9 DALLESIHQEFTRTNFHLFIQT XP_016 SSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS 460 470 480 517 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:02:56 2016 done: Sun Nov 6 13:02:58 2016 Total Scan time: 10.680 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]