FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6551, 132 aa 1>>>pF1KE6551 132 - 132 aa - 132 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5903+/-0.000249; mu= 11.5141+/- 0.016 mean_var=91.3963+/-18.081, 0's: 0 Z-trim(122.7): 12 B-trim: 66 in 1/51 Lambda= 0.134156 statistics sampled from 41250 (41266) to 41250 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.484), width: 16 Scan time: 4.880 The best scores are: opt bits E(85289) XP_011527122 (OMIM: 600201,611742) PREDICTED: agou ( 132) 896 181.9 2.6e-46 NP_001663 (OMIM: 600201,611742) agouti-signaling p ( 132) 896 181.9 2.6e-46 XP_011527123 (OMIM: 600201,611742) PREDICTED: agou ( 132) 896 181.9 2.6e-46 XP_005260469 (OMIM: 600201,611742) PREDICTED: agou ( 136) 896 181.9 2.7e-46 NP_001129 (OMIM: 601665,602311) agouti-related pro ( 132) 178 42.9 0.00018 >>XP_011527122 (OMIM: 600201,611742) PREDICTED: agouti-s (132 aa) initn: 896 init1: 896 opt: 896 Z-score: 952.3 bits: 181.9 E(85289): 2.6e-46 Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR 70 80 90 100 110 120 130 pF1KE6 SACSCRVLSLNC :::::::::::: XP_011 SACSCRVLSLNC 130 >>NP_001663 (OMIM: 600201,611742) agouti-signaling prote (132 aa) initn: 896 init1: 896 opt: 896 Z-score: 952.3 bits: 181.9 E(85289): 2.6e-46 Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR 70 80 90 100 110 120 130 pF1KE6 SACSCRVLSLNC :::::::::::: NP_001 SACSCRVLSLNC 130 >>XP_011527123 (OMIM: 600201,611742) PREDICTED: agouti-s (132 aa) initn: 896 init1: 896 opt: 896 Z-score: 952.3 bits: 181.9 E(85289): 2.6e-46 Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR 70 80 90 100 110 120 130 pF1KE6 SACSCRVLSLNC :::::::::::: XP_011 SACSCRVLSLNC 130 >>XP_005260469 (OMIM: 600201,611742) PREDICTED: agouti-s (136 aa) initn: 896 init1: 896 opt: 896 Z-score: 952.1 bits: 181.9 E(85289): 2.7e-46 Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:5-136) 10 20 30 40 50 pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALN :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MPPGMDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 KKSKQIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KKSKQIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQC 70 80 90 100 110 120 120 130 pF1KE6 RFFRSACSCRVLSLNC :::::::::::::::: XP_005 RFFRSACSCRVLSLNC 130 >>NP_001129 (OMIM: 601665,602311) agouti-related protein (132 aa) initn: 164 init1: 164 opt: 178 Z-score: 201.3 bits: 42.9 E(85289): 0.00018 Smith-Waterman score: 178; 32.0% identity (55.7% similar) in 122 aa overlap (9-128:10-122) 10 20 30 40 50 pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKS : ::.. :. : : : .: : .... : ..:.... : ::. NP_001 MLTAAVLSCALLLALPATRGAQMGLAPMEGIR-----RPDQAL-LPELPGLGLRAPLKKT 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 KQIGRKAAEKKRSSKKEASMKKV-VRPRTPLSAP-CVATRNSCKPPAPACCDPCASCQCR . ::. .. .: . . .. : : :. :: ..:: ::::::.: :: NP_001 TA---EQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCR 60 70 80 90 100 110 120 130 pF1KE6 FFRSACSCRVLSLNC :: . : :: : NP_001 FFNAFCYCRKLGTAMNPCSRT 120 130 132 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:20:34 2016 done: Tue Nov 8 14:20:34 2016 Total Scan time: 4.880 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]