(Circular) (Six-base) MAPSORT of: pFN21AB7041.seq Check: 6872 from: 1 to: 6421 pFN21AB7041 6421 bp With 182 enzymes: SgfI * December 28, 2011 15:25 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2391 3677 2391 Size: 1286 5135 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4231 278 Size: 53 83 186 936 2695 2468 Fragments arranged by size: 2695 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3303 3764 1937 Size: 1366 461 4594 Fragments arranged by size: 4594 1366 461 Acc65I G'GTAC_C Cuts at: 3742 3742 Size: 6421 AclI AA'CG_TT Cuts at: 1563 4548 4921 1563 Size: 2985 373 3063 Fragments arranged by size: 3063 2985 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3155 4484 5868 6136 1632 Size: 1523 1329 1384 268 1917 Fragments arranged by size: 1917 1523 1384 1329 268 AfeI AGC'GCT Cuts at: 2735 3611 2735 Size: 876 5545 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6224 AflIII A'CryG_T Cuts at: 1203 5320 6297 1203 Size: 4117 977 1327 Fragments arranged by size: 4117 1327 977 AgeI A'CCGG_T Cuts at: 2583 5252 2583 Size: 2669 3752 AhdI GACnn_n'nnGTC Cuts at: 5150 5150 Size: 6421 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6421 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 6421 AlwNI CAG_nnn'CTG Cuts at: 2565 4164 5736 2565 Size: 1599 1572 3250 Fragments arranged by size: 3250 1599 1572 ApaI G_GGCC'C Cuts at: 2126 2697 2126 Size: 571 5850 ApaLI G'TGCA_C Cuts at: 4478 5634 4478 Size: 1156 5265 ApoI r'AATT_y Cuts at: 1493 3730 3956 4108 6217 1493 Size: 2237 226 152 2109 1697 Fragments arranged by size: 2237 2109 1697 226 152 AseI AT'TA_AT Cuts at: 160 1032 4975 160 Size: 872 3943 1606 Fragments arranged by size: 3943 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6421 AvaI C'yCGr_G Cuts at: 1870 1943 2867 3355 3437 3746 1870 Size: 73 924 488 82 309 4545 Fragments arranged by size: 4545 924 488 309 82 73 AvrII C'CTAG_G Cuts at: 3634 3634 Size: 6421 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2597 2630 2597 Size: 33 6388 BamHI G'GATC_C Cuts at: 3751 4118 3751 Size: 367 6054 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2945 3279 3662 3742 5197 Size: 325 217 627 1158 334 383 80 1455 Cuts at: 5197 618 Size: 1842 Fragments arranged by size: 1842 1455 1158 627 383 334 325 217 80 BanII G_rGCy'C Cuts at: 1391 2072 2126 2207 2697 2718 3740 1391 Size: 681 54 81 490 21 1022 4072 Fragments arranged by size: 4072 1022 681 490 81 54 21 BbeI G_GCGC'C Cuts at: 2949 3283 3666 2949 Size: 334 383 5704 Fragments arranged by size: 5704 383 334 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2299 2764 3064 3145 928 Size: 971 400 465 300 81 4204 Fragments arranged by size: 4204 971 465 400 300 81 BbvCI CC'TCA_GC Cuts at: 2558 2558 Size: 6421 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3514 3548 4612 4646 1903 Size: 34 1577 34 1064 34 3678 Fragments arranged by size: 3678 1577 1064 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4313 5523 4313 Size: 1210 5211 BclI T'GATC_A Cuts at: 1548 1548 Size: 6421 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2654 2954 5032 Size: 107 122 71 631 605 982 300 2078 Cuts at: 5032 136 Size: 1525 Fragments arranged by size: 2078 1525 982 631 605 300 122 107 71 BglII A'GATC_T Cuts at: 6416 6416 Size: 6421 BlpI GC'TnA_GC Cuts at: 2438 3838 2438 Size: 1400 5021 Bme1580I G_kGCm'C Cuts at: 1790 2126 2697 2724 4482 5638 1790 Size: 336 571 27 1758 1156 2573 Fragments arranged by size: 2573 1758 1156 571 336 27 BmgBI CAC'GTC Cuts at: 1318 2245 2533 1318 Size: 927 288 5206 Fragments arranged by size: 5206 927 288 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 4152 5110 442 Size: 416 53 83 399 24 2735 958 1753 Fragments arranged by size: 2735 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6421 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2056 3532 5081 1239 Size: 817 1476 1549 2579 Fragments arranged by size: 2579 1549 1476 817 Bpu10I CC'TnA_GC Cuts at: 2024 2558 2024 Size: 534 5887 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2594 3002 4546 5411 5709 2594 Size: 408 1544 865 298 3306 Fragments arranged by size: 3306 1544 865 408 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3511 3704 5084 882 Size: 617 2012 193 1380 2219 Fragments arranged by size: 2219 2012 1380 617 193 BsaAI yAC'GTr Cuts at: 493 1204 2590 2839 4212 493 Size: 711 1386 249 1373 2702 Fragments arranged by size: 2702 1386 1373 711 249 BsaBI GATnn'nnATC Cuts at: 6415 6415 Size: 6421 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2304 2877 2946 3150 Size: 53 83 186 936 771 573 69 204 Cuts at: 3150 3280 3639 3663 4228 4610 5245 275 Size: 130 359 24 565 382 635 1451 Fragments arranged by size: 1451 936 771 635 573 565 382 359 204 186 130 83 69 53 24 BsaWI w'CCGG_w Cuts at: 2199 2583 3451 3513 4854 5252 5526 5673 6084 Size: 384 868 62 1341 398 274 147 411 Cuts at: 6084 2199 Size: 2536 Fragments arranged by size: 2536 1341 868 411 398 384 274 147 62 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2189 2219 3614 3644 1178 Size: 30 165 30 786 30 1395 30 3955 Fragments arranged by size: 3955 1395 786 165 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2767 2768 1186 Size: 1581 1 4839 Fragments arranged by size: 4839 1581 1 BseYI C'CCAG_C Cuts at: 2617 2701 3476 3502 3528 3606 5624 6120 2617 Size: 84 775 26 26 78 2018 496 2918 Fragments arranged by size: 2918 2018 775 496 84 78 26 26 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2527 2551 1163 Size: 573 791 24 5033 Fragments arranged by size: 5033 791 573 24 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2262 2646 3456 3871 4632 5660 Size: 275 186 261 384 810 415 761 1028 Cuts at: 5660 1540 Size: 2301 Fragments arranged by size: 2301 1028 810 761 415 384 275 261 186 BsiHKAI G_wGCw'C Cuts at: 2207 2789 3081 4482 4567 5638 2207 Size: 582 292 1401 85 1071 2990 Fragments arranged by size: 2990 1401 1071 582 292 85 BsmI GAATG_Cn' Cuts at: 3932 4025 3932 Size: 93 6328 BsmBI CGTCTCn'nnnn_ Cuts at: 3254 3254 Size: 6421 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2072 2126 2207 2697 2718 2724 2789 Size: 399 282 54 81 490 21 6 65 Cuts at: 2789 3081 3740 4482 4567 5638 1391 Size: 292 659 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 659 490 399 292 282 85 81 65 54 21 6 BspEI T'CCGG_A Cuts at: 3513 6084 3513 Size: 2571 3850 BspHI T'CATG_A Cuts at: 2625 4310 6040 2625 Size: 1685 1730 3006 Fragments arranged by size: 3006 1730 1685 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2330 2355 2391 2439 2805 3677 3776 844 Size: 1486 25 36 48 366 872 99 3489 Fragments arranged by size: 3489 1486 872 366 99 48 36 25 BsrBI CCG'CTC Cuts at: 1394 1823 3112 3202 4308 1394 Size: 429 1289 90 1106 3507 Fragments arranged by size: 3507 1289 1106 429 90 BsrDI GCAATG_nn' Cuts at: 65 1248 4916 5090 65 Size: 1183 3668 174 1396 Fragments arranged by size: 3668 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2583 3276 5065 5252 1700 Size: 110 773 693 1789 187 2869 Fragments arranged by size: 2869 1789 773 693 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6421 BssHII G'CGCG_C Cuts at: 1925 2283 2846 3235 3535 3579 3586 1925 Size: 358 563 389 300 44 7 4760 Fragments arranged by size: 4760 563 389 358 300 44 7 BssSI C'ACGA_G Cuts at: 3647 4481 5493 3647 Size: 834 1012 4575 Fragments arranged by size: 4575 1012 834 BstAPI GCAn_nnn'nTGC Cuts at: 794 2965 794 Size: 2171 4250 BstBI TT'CG_AA Cuts at: 5225 5225 Size: 6421 BstEII G'GTnAC_C Cuts at: 1184 2342 1184 Size: 1158 5263 BstXI CCAn_nnnn'nTGG Cuts at: 2578 3052 3064 2578 Size: 474 12 5935 Fragments arranged by size: 5935 474 12 BstYI r'GATC_y Cuts at: 1972 3564 3751 4118 4503 4520 5972 6058 6070 Size: 1592 187 367 385 17 1452 86 12 Cuts at: 6070 6416 1972 Size: 346 1977 Fragments arranged by size: 1977 1592 1452 385 367 346 187 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2208 2334 2421 2469 2526 2577 2802 Size: 552 1143 126 87 48 57 51 225 Cuts at: 2802 2940 513 Size: 138 3994 Fragments arranged by size: 3994 1143 552 225 138 126 87 57 51 48 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5682 Fragments arranged by size: 5682 683 56 BtsI GCAGTG_nn' Cuts at: 3937 4731 4751 3937 Size: 794 20 5607 Fragments arranged by size: 5607 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6421 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6386 DraI TTT'AAA Cuts at: 3725 3725 Size: 6421 DraIII CAC_nnn'GTG Cuts at: 3652 3652 Size: 6421 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 5428 809 Size: 507 4112 1802 Fragments arranged by size: 4112 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2259 2331 2418 Size: 54 1425 50 275 18 429 72 87 Cuts at: 2418 2424 2463 2497 2643 2937 3042 3054 3307 Size: 6 39 34 146 294 105 12 253 Cuts at: 3307 3654 3687 3868 4757 6386 8 Size: 347 33 181 889 1629 43 Fragments arranged by size: 1629 1425 889 429 347 294 275 253 181 146 105 87 72 54 50 43 39 34 33 18 12 6 EagI C'GGCC_G Cuts at: 1537 1812 2259 2643 3868 1537 Size: 275 447 384 1225 4090 Fragments arranged by size: 4090 1225 447 384 275 EarI CTCTTCn'nnn_ Cuts at: 1353 4351 1353 Size: 2998 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 5008 5382 5528 387 Size: 1064 138 3419 374 146 1280 Fragments arranged by size: 3419 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2205 2205 Size: 6421 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2056 3155 3532 4484 5081 5868 6136 Size: 393 424 1099 377 952 597 787 268 Cuts at: 6136 1239 Size: 1524 Fragments arranged by size: 1524 1099 952 787 597 424 393 377 268 EcoNI CCTnn'n_nnAGG Cuts at: 3341 3341 Size: 6421 EcoO109I rG'GnC_Cy Cuts at: 2042 2122 2693 2694 2042 Size: 80 571 1 5769 Fragments arranged by size: 5769 571 80 1 EcoRI G'AATT_C Cuts at: 3730 4108 3730 Size: 378 6043 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 3181 3256 3181 Size: 75 6346 FspI TGC'GCA Cuts at: 2918 2969 4927 2918 Size: 51 1958 4412 Fragments arranged by size: 4412 1958 51 HaeII r_GCGC'y Cuts at: 1678 2445 2737 2949 2976 3283 3386 3483 3613 Size: 767 292 212 27 307 103 97 130 Cuts at: 3613 3666 5568 1678 Size: 53 1902 2531 Fragments arranged by size: 2531 1902 767 307 292 212 130 103 97 53 27 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3433 3465 3614 3646 5062 Size: 32 135 32 1861 32 149 32 1416 Cuts at: 5062 5094 5136 5168 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1861 1416 149 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3765 4011 669 Size: 988 281 1827 246 3079 Fragments arranged by size: 3079 1827 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6421 HpaI GTT'AAC Cuts at: 4011 4011 Size: 6421 KasI G'GCGC_C Cuts at: 2945 3279 3662 2945 Size: 334 383 5704 Fragments arranged by size: 5704 383 334 KpnI G_GTAC'C Cuts at: 3746 3746 Size: 6421 MfeI C'AATT_G Cuts at: 4020 4020 Size: 6421 MluI A'CGCG_T Cuts at: 6297 6297 Size: 6421 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 5535 5719 1305 Size: 4230 184 2007 Fragments arranged by size: 4230 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 3056 10 Size: 54 1425 343 1224 3375 Fragments arranged by size: 3375 1425 1224 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2327 2576 3062 4379 4738 4897 518 Size: 648 1161 249 486 1317 359 159 2042 Fragments arranged by size: 2042 1317 1161 648 486 359 249 159 MspA1I CmG'CkG Cuts at: 1606 2187 2210 3133 3189 3333 3388 3532 3837 Size: 581 23 923 56 144 55 144 305 Cuts at: 3837 4514 5662 5907 1606 Size: 677 1148 245 2120 Fragments arranged by size: 2120 1148 923 677 581 305 245 144 144 56 55 23 NaeI GCC'GGC Cuts at: 3278 3278 Size: 6421 NarI GG'CG_CC Cuts at: 2946 3280 3663 2946 Size: 334 383 5704 Fragments arranged by size: 5704 383 334 NcoI C'CATG_G Cuts at: 513 1065 2469 2802 513 Size: 552 1404 333 4132 Fragments arranged by size: 4132 1404 552 333 NdeI CA'TA_TG Cuts at: 387 387 Size: 6421 NgoMIV G'CCGG_C Cuts at: 3276 3276 Size: 6421 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6421 NotI GC'GGCC_GC Cuts at: 2643 3868 2643 Size: 1225 5196 NspI r_CATG'y Cuts at: 1132 1229 2968 3779 5324 1132 Size: 97 1739 811 1545 2229 Fragments arranged by size: 2229 1739 1545 811 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 6421 PciI A'CATG_T Cuts at: 5320 5320 Size: 6421 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 6421 PmeI GTTT'AAAC Cuts at: 3725 3725 Size: 6421 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4490 4522 6003 6035 4490 Size: 32 1481 32 4876 Fragments arranged by size: 4876 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2042 2042 Size: 6421 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6421 PsiI TTA'TAA Cuts at: 3991 3991 Size: 6421 PspOMI G'GGCC_C Cuts at: 2122 2693 2122 Size: 571 5850 PspXI vC'TCGA_Gb Cuts at: 2867 2867 Size: 6421 PstI C_TGCA'G Cuts at: 830 2388 3773 830 Size: 1558 1385 3478 Fragments arranged by size: 3478 1558 1385 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6421 PvuII CAG'CTG Cuts at: 3133 3189 3532 3133 Size: 56 343 6022 Fragments arranged by size: 6022 343 56 SacI G_AGCT'C Cuts at: 2207 2207 Size: 6421 SacII CC_GC'GG Cuts at: 2211 2211 Size: 6421 SalI G'TCGA_C Cuts at: 1936 3763 1936 Size: 1827 4594 SanDI GG'GwC_CC Cuts at: 2042 2042 Size: 6421 SbfI CC_TGCA'GG Cuts at: 3773 3773 Size: 6421 ScaI AGT'ACT Cuts at: 4669 6381 4669 Size: 1712 4709 SfcI C'TryA_G Cuts at: 826 1045 2384 3694 3769 4904 5585 5776 826 Size: 219 1339 1310 75 1135 681 191 1471 Fragments arranged by size: 1471 1339 1310 1135 681 219 191 75 SfoI GGC'GCC Cuts at: 2947 3281 3664 2947 Size: 334 383 5704 Fragments arranged by size: 5704 383 334 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6421 SgrAI Cr'CCGG_yG Cuts at: 1700 3276 1700 Size: 1576 4845 SmaI CCC'GGG Cuts at: 1872 3748 1872 Size: 1876 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2609 2867 3017 4525 5426 5688 Size: 197 926 666 258 150 1508 901 262 Cuts at: 5688 820 Size: 1553 Fragments arranged by size: 1553 1508 926 901 666 262 258 197 150 SnaBI TAC'GTA Cuts at: 493 4212 493 Size: 3719 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6421 SphI G_CATG'C Cuts at: 1132 2968 3779 1132 Size: 1836 811 3774 Fragments arranged by size: 3774 1836 811 SspI AAT'ATT Cuts at: 5 52 4345 5 Size: 47 4293 2081 Fragments arranged by size: 4293 2081 47 StuI AGG'CCT Cuts at: 1517 2900 3677 1517 Size: 1383 777 4261 Fragments arranged by size: 4261 1383 777 StyI C'CwwG_G Cuts at: 513 1065 2469 2802 2976 3634 3860 513 Size: 552 1404 333 174 658 226 3074 Fragments arranged by size: 3074 1404 658 552 333 226 174 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2645 3056 3490 3728 4448 4465 4618 Size: 1255 1065 411 434 238 720 17 153 Cuts at: 4618 4803 5248 325 Size: 185 445 1498 Fragments arranged by size: 1498 1255 1065 720 445 434 411 238 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2823 4667 6379 Size: 274 80 33 51 1443 846 1844 1712 Cuts at: 6379 96 Size: 138 Fragments arranged by size: 1844 1712 1443 846 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2262 2294 2522 2554 6381 6413 2262 Size: 32 228 32 3827 32 2270 Fragments arranged by size: 3827 2270 228 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 6421 XbaI T'CTAG_A Cuts at: 3757 3757 Size: 6421 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2476 2476 Size: 6421 XhoI C'TCGA_G Cuts at: 1943 2867 1943 Size: 924 5497 XmaI C'CCGG_G Cuts at: 1870 3746 1870 Size: 1876 4545 XmnI GAAnn'nnTTC Cuts at: 4550 4550 Size: 6421 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4229 276 Size: 53 83 186 936 2695 2468 Fragments arranged by size: 2695 2468 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI AvrII BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PspXI PstI PvuI PvuII SacI SacII SalI SanDI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AloI AscI BfrBI BplI BsiWI BstZ17I Bsu36I EcoRV FseI FspAI NruI NsiI PacI PfoI PmlI PsrI RsrII SapI SexAI SfiI SrfI SwaI