FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1692, 200 aa 1>>>pF1KE1692 200 - 200 aa - 200 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9679+/-0.000619; mu= 16.1887+/- 0.038 mean_var=73.1168+/-14.074, 0's: 0 Z-trim(112.6): 4 B-trim: 0 in 0/52 Lambda= 0.149991 statistics sampled from 13338 (13341) to 13338 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.41), width: 16 Scan time: 2.180 The best scores are: opt bits E(32554) CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19 ( 200) 1337 297.5 3.6e-81 CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19 ( 196) 899 202.7 1.2e-52 CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19 ( 200) 884 199.5 1.1e-51 >>CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19 (200 aa) initn: 1337 init1: 1337 opt: 1337 Z-score: 1570.8 bits: 297.5 E(32554): 3.6e-81 Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MAAAWTVVLVTLVLGLAVAGPVPTSKPTTTGKGCHIGRFKSLSPQELASFKKARDALEES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAAAWTVVLVTLVLGLAVAGPVPTSKPTTTGKGCHIGRFKSLSPQELASFKKARDALEES 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAGPALEDVLDQPLHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAGPALEDVLDQPLHT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFRLLTRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFRLLTRD 130 140 150 160 170 180 190 200 pF1KE1 LKYVADGNLCLRTSTHPEST :::::::::::::::::::: CCDS12 LKYVADGNLCLRTSTHPEST 190 200 >>CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19 (196 aa) initn: 948 init1: 521 opt: 899 Z-score: 1058.7 bits: 202.7 E(32554): 1.2e-52 Smith-Waterman score: 899; 74.1% identity (86.8% similar) in 189 aa overlap (8-191:8-196) 10 20 30 40 50 pF1KE1 MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKARDAL ::: .. :.:.: ::... ..::::..::::::::: .::.:.::: CCDS12 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRAKDAL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 EESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALEDVLD :::: ::. .: : .:: .:::: :::::::::::::::::::::::.: ::: :::: CCDS12 EESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALGDVLD 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 QPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFR :::::::::::::.:::::::::::: ::::::::::::::::::: ::::::::::::: CCDS12 QPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTFNLFR 130 140 150 160 170 180 180 190 200 pF1KE1 LLTRDLKYVADGNLCLRTSTHPEST ::::::. ::.:.::. CCDS12 LLTRDLNCVASGDLCV 190 >>CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19 (200 aa) initn: 930 init1: 509 opt: 884 Z-score: 1041.1 bits: 199.5 E(32554): 1.1e-51 Smith-Waterman score: 884; 72.3% identity (85.9% similar) in 191 aa overlap (6-191:10-200) 10 20 30 40 50 pF1KE1 MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKA : ::: .. :.:.: ::... ..::::..::::::::: .::.: CCDS42 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 RDALEESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALE .::::::: ::. : : .:: .:::: :::::::.:::::::::::::::.: ::: CCDS42 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 DVLDQPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTF ::::::::::::::::..:::::::::::: ::::::::.:::::::::: ::::::::: CCDS42 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF 130 140 150 160 170 180 180 190 200 pF1KE1 NLFRLLTRDLKYVADGNLCLRTSTHPEST ::::::::::. ::.:.::. CCDS42 NLFRLLTRDLNCVASGDLCV 190 200 200 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:02:05 2016 done: Sun Nov 6 05:02:05 2016 Total Scan time: 2.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]