FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6601, 235 aa 1>>>pF1KE6601 235 - 235 aa - 235 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1363+/-0.000319; mu= 15.4413+/- 0.020 mean_var=63.8786+/-12.288, 0's: 0 Z-trim(115.3): 4 B-trim: 0 in 0/55 Lambda= 0.160471 statistics sampled from 25588 (25592) to 25588 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.3), width: 16 Scan time: 4.510 The best scores are: opt bits E(85289) NP_997274 (OMIM: 607814,608415) regulator of G-pro ( 235) 1495 354.4 1e-97 XP_005248559 (OMIM: 610890) PREDICTED: regulator o ( 227) 163 46.0 6.5e-05 NP_001025046 (OMIM: 610890) regulator of G-protein ( 257) 163 46.0 7.2e-05 >>NP_997274 (OMIM: 607814,608415) regulator of G-protein (235 aa) initn: 1495 init1: 1495 opt: 1495 Z-score: 1875.5 bits: 354.4 E(85289): 1e-97 Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235) 10 20 30 40 50 60 pF1KE6 MAREECKALLDGLNKTTACYHHLVLTVGGSADSQNLRQELQKTRQKAQELAVSTCARLTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_997 MAREECKALLDGLNKTTACYHHLVLTVGGSADSQNLRQELQKTRQKAQELAVSTCARLTA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VLRDRGLAADERAEFERLWVAFSGCLDLLEADMRRALELGAAFPLHAPRRPLVRTGVAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_997 VLRDRGLAADERAEFERLWVAFSGCLDLLEADMRRALELGAAFPLHAPRRPLVRTGVAGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SSGVAARALSTRSLRLEAEGDFDVADLRELEREVLQVGEMIDNMEMKVNVPRWTVQARQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_997 SSGVAARALSTRSLRLEAEGDFDVADLRELEREVLQVGEMIDNMEMKVNVPRWTVQARQA 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 AGAELLSTVSAGPSSVVSLQERGGGCDPRKALAAILFGAVLLAAVALAVCVAKLS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_997 AGAELLSTVSAGPSSVVSLQERGGGCDPRKALAAILFGAVLLAAVALAVCVAKLS 190 200 210 220 230 >>XP_005248559 (OMIM: 610890) PREDICTED: regulator of G- (227 aa) initn: 99 init1: 58 opt: 163 Z-score: 209.1 bits: 46.0 E(85289): 6.5e-05 Smith-Waterman score: 163; 29.9% identity (67.3% similar) in 107 aa overlap (2-106:49-152) 10 20 30 pF1KE6 MAREECKALLDGLNKTTACYHHLVLTVGG-S : ..:: :.. .: .: :..::...: : XP_005 SIFQISKPPLQSGDWERRGSGSESAHKTQRALDDCKMLVQEFNTQVALYRELVISIGDVS 20 30 40 50 60 70 40 50 60 70 80 pF1KE6 ADSQNLRQELQKTRQKAQELAVSTCARLTAVLRDRGLAADE-RAEFERLWVAFSGCLDLL .. .:: :..::: :. :.: .. .:.:. : : . :. ::.. .. ::.. XP_005 VSCPSLRAEMHKTRTKGCEMARQAHQKLAAI---SGPEDGEIHPEICRLYIQLQCCLEMY 80 90 100 110 120 130 90 100 110 120 130 140 pF1KE6 EADMRRALELGAAFPLHAPRRPLVRTGVAGASSGVAARALSTRSLRLEAEGDFDVADLRE ..: ... : ... .: XP_005 TTEMLKSICLLGSLQFHRKGKEPGGGTKSLDCKIEESAETPALEDSSSSPVDSQQHSWQV 140 150 160 170 180 190 >>NP_001025046 (OMIM: 610890) regulator of G-protein sig (257 aa) initn: 99 init1: 58 opt: 163 Z-score: 208.3 bits: 46.0 E(85289): 7.2e-05 Smith-Waterman score: 163; 29.9% identity (67.3% similar) in 107 aa overlap (2-106:49-152) 10 20 30 pF1KE6 MAREECKALLDGLNKTTACYHHLVLTVGG-S : ..:: :.. .: .: :..::...: : NP_001 SIFQISKPPLQSGDWERRGSGSESAHKTQRALDDCKMLVQEFNTQVALYRELVISIGDVS 20 30 40 50 60 70 40 50 60 70 80 pF1KE6 ADSQNLRQELQKTRQKAQELAVSTCARLTAVLRDRGLAADE-RAEFERLWVAFSGCLDLL .. .:: :..::: :. :.: .. .:.:. : : . :. ::.. .. ::.. NP_001 VSCPSLRAEMHKTRTKGCEMARQAHQKLAAI---SGPEDGEIHPEICRLYIQLQCCLEMY 80 90 100 110 120 130 90 100 110 120 130 140 pF1KE6 EADMRRALELGAAFPLHAPRRPLVRTGVAGASSGVAARALSTRSLRLEAEGDFDVADLRE ..: ... : ... .: NP_001 TTEMLKSICLLGSLQFHRKGKEPGGGTKSLDCKIEESAETPALEDSSSSPVDSQQHSWQV 140 150 160 170 180 190 235 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:40:40 2016 done: Tue Nov 8 14:40:41 2016 Total Scan time: 4.510 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]