FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1657, 173 aa 1>>>pF1KE1657 173 - 173 aa - 173 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1636+/-0.000352; mu= 13.2234+/- 0.022 mean_var=61.3337+/-11.963, 0's: 0 Z-trim(113.9): 3 B-trim: 105 in 1/55 Lambda= 0.163766 statistics sampled from 23410 (23412) to 23410 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.275), width: 16 Scan time: 5.290 The best scores are: opt bits E(85289) NP_061980 (OMIM: 606746) myeloid-derived growth fa ( 173) 1151 280.1 1.2e-75 XP_016882476 (OMIM: 606746) PREDICTED: myeloid-der ( 214) 693 171.9 5.5e-43 >>NP_061980 (OMIM: 606746) myeloid-derived growth factor (173 aa) initn: 1151 init1: 1151 opt: 1151 Z-score: 1478.9 bits: 280.1 E(85289): 1.2e-75 Smith-Waterman score: 1151; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KE1 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 MAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL 130 140 150 160 170 >>XP_016882476 (OMIM: 606746) PREDICTED: myeloid-derived (214 aa) initn: 693 init1: 693 opt: 693 Z-score: 892.7 bits: 171.9 E(85289): 5.5e-43 Smith-Waterman score: 693; 98.0% identity (98.0% similar) in 101 aa overlap (1-101:1-101) 10 20 30 40 50 60 pF1KE1 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA :::::::::::::::::::::::::::::::::::::: : XP_016 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQEASGGSLRGDRPHQPRETLQRP 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 MAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL XP_016 PCSLGEAHGRHRLSAGHCPAWTPECQLPRGHLGRCRSGAVGMVAGLTLSLNPPVQPPQKL 130 140 150 160 170 180 173 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:31:56 2016 done: Sun Nov 6 13:31:57 2016 Total Scan time: 5.290 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]