FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5970, 560 aa 1>>>pF1KB5970 560 - 560 aa - 560 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5763+/-0.000322; mu= 4.5948+/- 0.020 mean_var=202.2846+/-41.650, 0's: 0 Z-trim(122.6): 24 B-trim: 312 in 1/55 Lambda= 0.090176 statistics sampled from 41064 (41095) to 41064 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.482), width: 16 Scan time: 13.650 The best scores are: opt bits E(85289) NP_000470 (OMIM: 261550,600957) muellerian-inhibit ( 560) 3811 508.3 2.6e-143 NP_001483 (OMIM: 187500,208530,217095,602880,61385 ( 372) 231 42.4 0.0031 >>NP_000470 (OMIM: 261550,600957) muellerian-inhibiting (560 aa) initn: 3811 init1: 3811 opt: 3811 Z-score: 2693.8 bits: 508.3 E(85289): 2.6e-143 Smith-Waterman score: 3811; 100.0% identity (100.0% similar) in 560 aa overlap (1-560:1-560) 10 20 30 40 50 60 pF1KB5 MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGSPQEPLCLVALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGSPQEPLCLVALG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 GDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 WLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 WLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 LPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 APLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 APLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGD 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 PLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB5 ETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQARGAALARPPCCVPTAYAGKLLISLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQARGAALARPPCCVPTAYAGKLLISLS 490 500 510 520 530 540 550 560 pF1KB5 EERISAHHVPNMVATECGCR :::::::::::::::::::: NP_000 EERISAHHVPNMVATECGCR 550 560 >>NP_001483 (OMIM: 187500,208530,217095,602880,613854) e (372 aa) initn: 282 init1: 77 opt: 231 Z-score: 179.2 bits: 42.4 E(85289): 0.0031 Smith-Waterman score: 271; 29.1% identity (45.8% similar) in 426 aa overlap (152-560:2-372) 130 140 150 160 170 180 pF1KB5 LRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAGL :: :: ::.: : . .::: . NP_001 MPPPQQGPCGHHLLLLLALLLPSLPLTRAPV 10 20 30 190 200 210 220 230 240 pF1KB5 PGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARL-QALLFGDDHR : . :. . :.: :: : . .. :: : : :. NP_001 PPG----PAAALLQALGLRDEPQGAPRLRPVPPVMW------RLFRRRDPQETRSGS--- 40 50 60 70 250 260 270 280 290 300 pF1KB5 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA : .:.. : : . : . :.. : : : . : :: : . NP_001 --RRTSPGVTLQP-CHVEELGVAGNI--VRHIPDRGAPTRASEPASAAGHCPEWTVVFDL 80 90 100 110 120 130 310 320 330 340 350 pF1KB5 LRVPPA-RASAPRLALD-PDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTG : :: : : :: : : :. :.: .:: : . : .: .::: . . : NP_001 SAVEPAERPSRARLELRFAAAAAAAPEGGWELSVAQAGQG--AGADPGPVLLRQLVPALG 140 150 160 170 180 190 360 370 380 390 400 410 pF1KB5 DPAPLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARL-LALCPGGPGG : : ::: .:: :. :. : :: ::: : .:.. NP_001 PP------------------VRAELLGAAWA-RN------ASWPRSLRLALALRPRAPAA 200 210 220 420 430 440 450 460 470 pF1KB5 LGDPLRALLLLKALQGLRVEWRGRDPR--GP-GRAQRSAGATAADGP---CALRELSVDL . .: ::: .: ::: : .: .:.: . . :: : :.: :.. NP_001 CARLAEASLLLVTL----------DPRLCHPLARPRRDAEPVLGGGPGGACRARRLYVSF 230 240 250 260 270 480 490 500 510 520 pF1KB5 RA---ERSVLIPETYQANNCQGVCGWP---QSDRNPRYGNHVVLLLKMQARGAALARPPC : .: :. :. . :: ::: :. : ... .: ::.:: :.: . . : :: NP_001 REVGWHRWVIAPRGFLANYCQGQCALPVALSGSGGPPALNHAVLRALMHAAAPGAADLPC 280 290 300 310 320 330 530 540 550 560 pF1KB5 CVPTAYAG-KLLISLSEERISAHHVPNMVATECGCR :::. . ..:. . . . .. .::. ::::: NP_001 CVPARLSPISVLFFDNSDNVVLRQYEDMVVDECGCR 340 350 360 370 560 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:35:11 2016 done: Sun Nov 6 13:35:13 2016 Total Scan time: 13.650 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]