FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6868, 196 aa 1>>>pF1KB6868 196 - 196 aa - 196 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0190+/-0.000256; mu= 7.2584+/- 0.016 mean_var=130.6739+/-27.119, 0's: 0 Z-trim(124.6): 15 B-trim: 1824 in 1/57 Lambda= 0.112197 statistics sampled from 46552 (46567) to 46552 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.546), width: 16 Scan time: 7.010 The best scores are: opt bits E(85289) NP_001002244 (OMIM: 614534) anaphase-promoting com ( 196) 1440 242.9 2.6e-64 NP_001276349 (OMIM: 614534) anaphase-promoting com ( 141) 533 95.9 3.1e-20 NP_001276347 (OMIM: 614534) anaphase-promoting com ( 89) 408 75.6 2.7e-14 NP_001276348 (OMIM: 614534) anaphase-promoting com ( 89) 408 75.6 2.7e-14 NP_001002248 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 NP_001002245 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 NP_001002249 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 NP_001276343 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 NP_001276346 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 NP_001276345 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 NP_001002246 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 NP_001276344 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 NP_057560 (OMIM: 614534) anaphase-promoting comple ( 84) 323 61.8 3.5e-10 NP_001002247 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10 >>NP_001002244 (OMIM: 614534) anaphase-promoting complex (196 aa) initn: 1440 init1: 1440 opt: 1440 Z-score: 1275.7 bits: 242.9 E(85289): 2.6e-64 Smith-Waterman score: 1440; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM 130 140 150 160 170 180 190 pF1KB6 EVQGVRPDLALAGGAS :::::::::::::::: NP_001 EVQGVRPDLALAGGAS 190 >>NP_001276349 (OMIM: 614534) anaphase-promoting complex (141 aa) initn: 588 init1: 526 opt: 533 Z-score: 484.2 bits: 95.9 E(85289): 3.1e-20 Smith-Waterman score: 533; 66.4% identity (73.8% similar) in 122 aa overlap (1-113:1-121) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 RAHPQV--PINTA------SPTPGQHTGSLMSREESSRSPDPTPPALDQETS-SLLRCTS :::::. : .:: .:: . .: : :: . .: : . .: : : : NP_001 RAHPQARCPATTARWCGASAPTASTCIAS-SSGCTHSRCSSTAPCAARNGSSRSEARPGS 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 PWCLDHSCDLFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAA : NP_001 RWRGILRLLPHAGADGCWGQRP 120 130 140 >>NP_001276347 (OMIM: 614534) anaphase-promoting complex (89 aa) initn: 401 init1: 401 opt: 408 Z-score: 377.7 bits: 75.6 E(85289): 2.7e-14 Smith-Waterman score: 408; 73.6% identity (83.9% similar) in 87 aa overlap (110-196:6-89) 80 90 100 110 120 130 pF1KB6 GSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCDLFGITDQVSADGPRACRQG .. : : . .. ...: . :: :: NP_001 MRTVASAGWHLTDAALTVSVPSMLS-ERPRL--QG 10 20 30 140 150 160 170 180 190 pF1KB6 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS 40 50 60 70 80 >>NP_001276348 (OMIM: 614534) anaphase-promoting complex (89 aa) initn: 401 init1: 401 opt: 408 Z-score: 377.7 bits: 75.6 E(85289): 2.7e-14 Smith-Waterman score: 408; 73.6% identity (83.9% similar) in 87 aa overlap (110-196:6-89) 80 90 100 110 120 130 pF1KB6 GSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCDLFGITDQVSADGPRACRQG .. : : . .. ...: . :: :: NP_001 MRTVASAGWHLTDAALTVSVPSMLS-ERPRL--QG 10 20 30 140 150 160 170 180 190 pF1KB6 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS 40 50 60 70 80 >>NP_001002248 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10 Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG ::::::::::::::::::::::::::::::::::::: . :.. : : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD NP_001 LKWLHAQQVQQHCPMCRQEWKFKE 70 80 >>NP_001002245 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10 Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG ::::::::::::::::::::::::::::::::::::: . :.. : : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD NP_001 LKWLHAQQVQQHCPMCRQEWKFKE 70 80 >>NP_001002249 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10 Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG ::::::::::::::::::::::::::::::::::::: . :.. : : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD NP_001 LKWLHAQQVQQHCPMCRQEWKFKE 70 80 >>NP_001276343 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10 Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG ::::::::::::::::::::::::::::::::::::: . :.. : : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD NP_001 LKWLHAQQVQQHCPMCRQEWKFKE 70 80 >>NP_001276346 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10 Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG ::::::::::::::::::::::::::::::::::::: . :.. : : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD NP_001 LKWLHAQQVQQHCPMCRQEWKFKE 70 80 >>NP_001276345 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10 Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG ::::::::::::::::::::::::::::::::::::: . :.. : : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD NP_001 LKWLHAQQVQQHCPMCRQEWKFKE 70 80 196 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:49:16 2016 done: Sat Nov 5 22:49:17 2016 Total Scan time: 7.010 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]