FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6868, 196 aa 1>>>pF1KB6868 196 - 196 aa - 196 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5869+/-0.000628; mu= 9.9785+/- 0.038 mean_var=126.3206+/-25.629, 0's: 0 Z-trim(117.1): 8 B-trim: 626 in 1/52 Lambda= 0.114114 statistics sampled from 17839 (17844) to 17839 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.548), width: 16 Scan time: 2.360 The best scores are: opt bits E(32554) CCDS32769.1 ANAPC11 gene_id:51529|Hs108|chr17 ( 196) 1440 246.6 7.1e-66 CCDS74180.1 ANAPC11 gene_id:51529|Hs108|chr17 ( 89) 408 76.4 5.5e-15 CCDS11789.1 ANAPC11 gene_id:51529|Hs108|chr17 ( 84) 323 62.4 8.6e-11 >>CCDS32769.1 ANAPC11 gene_id:51529|Hs108|chr17 (196 aa) initn: 1440 init1: 1440 opt: 1440 Z-score: 1296.1 bits: 246.6 E(32554): 7.1e-66 Smith-Waterman score: 1440; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM 130 140 150 160 170 180 190 pF1KB6 EVQGVRPDLALAGGAS :::::::::::::::: CCDS32 EVQGVRPDLALAGGAS 190 >>CCDS74180.1 ANAPC11 gene_id:51529|Hs108|chr17 (89 aa) initn: 401 init1: 401 opt: 408 Z-score: 382.5 bits: 76.4 E(32554): 5.5e-15 Smith-Waterman score: 408; 73.6% identity (83.9% similar) in 87 aa overlap (110-196:6-89) 80 90 100 110 120 130 pF1KB6 GSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCDLFGITDQVSADGPRACRQG .. : : . .. ...: . :: :: CCDS74 MRTVASAGWHLTDAALTVSVPSMLS-ERPRL--QG 10 20 30 140 150 160 170 180 190 pF1KB6 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS 40 50 60 70 80 >>CCDS11789.1 ANAPC11 gene_id:51529|Hs108|chr17 (84 aa) initn: 337 init1: 312 opt: 323 Z-score: 307.2 bits: 62.4 E(32554): 8.6e-11 Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51) 10 20 30 40 50 60 pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG ::::::::::::::::::::::::::::::::::::: . :.. : : CCDS11 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD CCDS11 LKWLHAQQVQQHCPMCRQEWKFKE 70 80 196 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:49:16 2016 done: Sat Nov 5 22:49:16 2016 Total Scan time: 2.360 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]