FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9099, 222 aa 1>>>pF1KB9099 222 - 222 aa - 222 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7915+/-0.000866; mu= 16.7606+/- 0.052 mean_var=64.7812+/-13.057, 0's: 0 Z-trim(106.2): 22 B-trim: 0 in 0/49 Lambda= 0.159349 statistics sampled from 8853 (8870) to 8853 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.272), width: 16 Scan time: 2.150 The best scores are: opt bits E(32554) CCDS11668.1 CACNG1 gene_id:786|Hs108|chr17 ( 222) 1518 357.5 3.9e-99 CCDS12870.1 CACNG6 gene_id:59285|Hs108|chr19 ( 260) 559 137.1 1e-32 CCDS12871.1 CACNG6 gene_id:59285|Hs108|chr19 ( 214) 302 77.9 5.5e-15 >>CCDS11668.1 CACNG1 gene_id:786|Hs108|chr17 (222 aa) initn: 1518 init1: 1518 opt: 1518 Z-score: 1893.2 bits: 357.5 E(32554): 3.9e-99 Smith-Waterman score: 1518; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222) 10 20 30 40 50 60 pF1KB9 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 IPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IPMDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIIL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 GSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYYYSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMIDSEDTVWIEYYYSW 130 140 150 160 170 180 190 200 210 220 pF1KB9 SFACACAAFILLFLGGLALLLFSLPRMPRNPWESCMDAEPEH :::::::::::::::::::::::::::::::::::::::::: CCDS11 SFACACAAFILLFLGGLALLLFSLPRMPRNPWESCMDAEPEH 190 200 210 220 >>CCDS12870.1 CACNG6 gene_id:59285|Hs108|chr19 (260 aa) initn: 584 init1: 328 opt: 559 Z-score: 700.7 bits: 137.1 E(32554): 1e-32 Smith-Waterman score: 559; 39.7% identity (72.1% similar) in 219 aa overlap (8-215:38-252) 10 20 30 pF1KB9 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSP ::...:. .: .::. .: :. :. :. CCDS12 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNT 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB9 HMEHHNTTCEAAHFGLWRICTKR-----IPMDDSKTCGPITLPGEKNCSYFRHFNPGESS . . ...:::::.:::. :::: .:.: :::: :::: ::.::. :. ::.. CCDS12 YKANGSAVCEAAHLGLWKACTKRLWQADVPVD-RDTCGPAELPGEANCTYFKFFTTGENA 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB9 EIFEFTTQKEYSISAAAIAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCIL .::. ::.:: ...::.::...:. . :: ::... :.: ..::: ... ....:: .: CCDS12 RIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLL 130 140 150 160 170 180 160 170 180 190 200 pF1KB9 VSVEVMRQSVKRMI-----DSEDTVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPRM ::.::.:.::. .. . . . : ::::..:. .: ..:.::. .::..:: CCDS12 VSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW 190 200 210 220 230 240 210 220 pF1KB9 PRNPWES-CMDAEPEH : : : : CCDS12 P---WGSLCPKRGHRAT 250 260 >>CCDS12871.1 CACNG6 gene_id:59285|Hs108|chr19 (214 aa) initn: 467 init1: 161 opt: 302 Z-score: 382.6 bits: 77.9 E(32554): 5.5e-15 Smith-Waterman score: 348; 32.9% identity (55.3% similar) in 219 aa overlap (8-215:38-206) 10 20 30 pF1KB9 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSP ::...:. .: .::. .: :. :. :. CCDS12 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNT 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB9 HMEHHNTTCEAAHFGLWRICTKR-----IPMDDSKTCGPITLPGEKNCSYFRHFNPGESS . . ...:::::.:::. :::: .:.: :::: :::: ::.::. :. ::.. CCDS12 YKANGSAVCEAAHLGLWKACTKRLWQADVPVD-RDTCGPAELPGEANCTYFKFFTTGENA 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB9 EIFEFTTQKEYSISAAAIAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCIL .::. ::.: :: .: CCDS12 RIFQRTTKK----------------------------------------------GLLLL 130 140 160 170 180 190 200 pF1KB9 VSVEVMRQSVKRMI-----DSEDTVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPRM ::.::.:.::. .. . . . : ::::..:. .: ..:.::. .::..:: CCDS12 VSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW 150 160 170 180 190 200 210 220 pF1KB9 PRNPWES-CMDAEPEH : : : : CCDS12 P---WGSLCPKRGHRAT 210 222 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 19:20:14 2016 done: Sat Nov 5 19:20:14 2016 Total Scan time: 2.150 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]