FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8966, 356 aa 1>>>pF1KB8966 356 - 356 aa - 356 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.8402+/-0.000374; mu= -10.1313+/- 0.024 mean_var=473.4868+/-95.807, 0's: 0 Z-trim(126.2): 137 B-trim: 60 in 1/61 Lambda= 0.058941 statistics sampled from 51423 (51586) to 51423 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.605), width: 16 Scan time: 11.120 The best scores are: opt bits E(85289) NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 2484 224.7 2.5e-58 XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 1582 147.8 2.4e-35 NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 866 87.1 6.8e-17 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 444 51.3 4.8e-06 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 444 51.3 4.8e-06 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 444 51.3 4.8e-06 NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 399 47.2 4.7e-05 NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 393 46.8 7.1e-05 NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 388 46.3 9.1e-05 NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 388 46.3 9.1e-05 XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014 XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014 XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014 NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 386 46.4 0.00014 XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014 XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014 XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014 XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 386 46.4 0.00014 NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 377 45.4 0.00019 NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 359 43.8 0.00049 XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 360 44.2 0.00067 NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 356 43.7 0.00069 NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 357 43.8 0.0007 XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 357 43.8 0.0007 XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008 NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 357 43.9 0.0008 XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008 XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008 XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008 XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 357 43.9 0.0008 XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098 XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098 XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098 XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098 XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098 XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098 XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098 XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 357 44.0 0.00098 XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 353 43.6 0.0011 NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 342 42.5 0.0015 NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 325 41.0 0.0038 NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 317 40.4 0.0071 NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 313 40.0 0.0077 NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 307 39.4 0.0096 >>NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [Homo (356 aa) initn: 2484 init1: 2484 opt: 2484 Z-score: 1168.2 bits: 224.7 E(85289): 2.5e-58 Smith-Waterman score: 2484; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356) 10 20 30 40 50 60 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD 250 260 270 280 290 300 310 320 330 340 350 pF1KB8 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP 310 320 330 340 350 >>XP_005257332 (OMIM: 142967) PREDICTED: homeobox protei (247 aa) initn: 1582 init1: 1582 opt: 1582 Z-score: 755.6 bits: 147.8 E(85289): 2.4e-35 Smith-Waterman score: 1582; 99.1% identity (100.0% similar) in 227 aa overlap (130-356:21-247) 100 110 120 130 140 150 pF1KB8 EKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELE ..:::::::::::::::::::::::::::: XP_005 MLCPDPGRGCRLERERRKPKSNGLGLPEAGGGGARRLRTAYTNTQLLELE 10 20 30 40 50 160 170 180 190 200 210 pF1KB8 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALE 60 70 80 90 100 110 220 230 240 250 260 270 pF1KB8 DICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCAL 120 130 140 150 160 170 280 290 300 310 320 330 pF1KB8 RGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEE 180 190 200 210 220 230 340 350 pF1KB8 ELDFFTSTLCAIDLQFP ::::::::::::::::: XP_005 ELDFFTSTLCAIDLQFP 240 >>NP_006726 (OMIM: 604685,612290) homeobox protein Hox-A (376 aa) initn: 921 init1: 716 opt: 866 Z-score: 424.3 bits: 87.1 E(85289): 6.8e-17 Smith-Waterman score: 1037; 51.2% identity (67.5% similar) in 381 aa overlap (1-354:1-372) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ ::.::::::::::::::::::::::: : .:::.:::: ::: :::::::.:::. NP_006 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA ::. : . : . .:: : : : : ::.:::::::.::: .: :. : NP_006 PGSH--PRHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKK---TALLPAAA 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 ASAVPA-SGVG--SPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRV :.:. : .: . : ..: . ...:::.::::::::::::::::::::::::::::::: NP_006 AAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRV 120 130 140 150 160 170 180 190 200 210 220 pF1KB8 EIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED---ICDPAEEP--- ::::::::::::::::::::::::::::: .: ..: : .::: . . :: NP_006 EIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLF 180 190 200 210 220 230 230 240 250 260 270 pF1KB8 --AASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGAS : : .: : .. . . .:.. ..: . . : ... . . NP_006 EQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPT 240 250 260 270 280 290 280 290 300 310 320 330 pF1KB8 SPGCALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSP :.: : : . : .: . . : : :.. :..::::::: ..:::: :::::: NP_006 VPNC-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSP 300 310 320 330 340 350 340 350 pF1KB8 VPFSEEELDFFTSTLCAIDLQFP : .: . :::::.:: .:::: NP_006 VDISADSLDFFTDTLTTIDLQHLNY 360 370 >>NP_109377 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa) initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06 Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE :: .. : : :. : : :::: . NP_109 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q 50 60 70 80 90 60 70 80 90 pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE----- . :. :: .: : : :: :::: :: : :: : .: NP_109 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 100 110 120 130 140 150 100 110 120 130 140 pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA ::::::... : . :..: :. .: :: : : ....: ::: NP_109 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA 160 170 180 190 150 160 170 180 190 200 pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR---- ::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . . NP_109 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT 200 210 220 230 240 250 210 220 230 240 250 pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA . :. :. ::: .... . . :: : :. . :: :.. NP_109 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS 260 270 280 290 300 310 260 270 280 290 300 310 pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA : : : : : .::: :::: . : . . .: .: . :. NP_109 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 320 330 340 350 360 320 330 340 350 pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP . : .. .. .:.: : : NP_109 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH 370 380 390 400 410 420 >>XP_006715778 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06 Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE :: .. : : :. : : :::: . XP_006 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q 50 60 70 80 90 60 70 80 90 pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE----- . :. :: .: : : :: :::: :: : :: : .: XP_006 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 100 110 120 130 140 150 100 110 120 130 140 pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA ::::::... : . :..: :. .: :: : : ....: ::: XP_006 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA 160 170 180 190 150 160 170 180 190 200 pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR---- ::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . . XP_006 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT 200 210 220 230 240 250 210 220 230 240 250 pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA . :. :. ::: .... . . :: : :. . :: :.. XP_006 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS 260 270 280 290 300 310 260 270 280 290 300 310 pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA : : : : : .::: :::: . : . . .: .: . :. XP_006 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 320 330 340 350 360 320 330 340 350 pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP . : .. .. .:.: : : XP_006 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH 370 380 390 400 410 420 >>XP_011513645 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06 Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE :: .. : : :. : : :::: . XP_011 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q 50 60 70 80 90 60 70 80 90 pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE----- . :. :: .: : : :: :::: :: : :: : .: XP_011 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 100 110 120 130 140 150 100 110 120 130 140 pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA ::::::... : . :..: :. .: :: : : ....: ::: XP_011 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA 160 170 180 190 150 160 170 180 190 200 pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR---- ::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . . XP_011 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT 200 210 220 230 240 250 210 220 230 240 250 pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA . :. :. ::: .... . . :: : :. . :: :.. XP_011 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS 260 270 280 290 300 310 260 270 280 290 300 310 pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA : : : : : .::: :::: . : . . .: .: . :. XP_011 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 320 330 340 350 360 320 330 340 350 pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP . : .. .. .:.: : : XP_011 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH 370 380 390 400 410 420 >>XP_005249787 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06 Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE :: .. : : :. : : :::: . XP_005 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q 50 60 70 80 90 60 70 80 90 pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE----- . :. :: .: : : :: :::: :: : :: : .: XP_005 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 100 110 120 130 140 150 100 110 120 130 140 pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA ::::::... : . :..: :. .: :: : : ....: ::: XP_005 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA 160 170 180 190 150 160 170 180 190 200 pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR---- ::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . . XP_005 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT 200 210 220 230 240 250 210 220 230 240 250 pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA . :. :. ::: .... . . :: : :. . :: :.. XP_005 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS 260 270 280 290 300 310 260 270 280 290 300 310 pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA : : : : : .::: :::: . : . . .: .: . :. XP_005 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 320 330 340 350 360 320 330 340 350 pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP . : .. .. .:.: : : XP_005 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH 370 380 390 400 410 420 >>NP_705895 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa) initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06 Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE :: .. : : :. : : :::: . NP_705 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q 50 60 70 80 90 60 70 80 90 pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE----- . :. :: .: : : :: :::: :: : :: : .: NP_705 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 100 110 120 130 140 150 100 110 120 130 140 pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA ::::::... : . :..: :. .: :: : : ....: ::: NP_705 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA 160 170 180 190 150 160 170 180 190 200 pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR---- ::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . . NP_705 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT 200 210 220 230 240 250 210 220 230 240 250 pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA . :. :. ::: .... . . :: : :. . :: :.. NP_705 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS 260 270 280 290 300 310 260 270 280 290 300 310 pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA : : : : : .::: :::: . : . . .: .: . :. NP_705 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 320 330 340 350 360 320 330 340 350 pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP . : .. .. .:.: : : NP_705 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH 370 380 390 400 410 420 >>XP_005249788 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06 Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE :: .. : : :. : : :::: . XP_005 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q 50 60 70 80 90 60 70 80 90 pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE----- . :. :: .: : : :: :::: :: : :: : .: XP_005 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 100 110 120 130 140 150 100 110 120 130 140 pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA ::::::... : . :..: :. .: :: : : ....: ::: XP_005 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA 160 170 180 190 150 160 170 180 190 200 pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR---- ::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . . XP_005 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT 200 210 220 230 240 250 210 220 230 240 250 pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA . :. :. ::: .... . . :: : :. . :: :.. XP_005 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS 260 270 280 290 300 310 260 270 280 290 300 310 pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA : : : : : .::: :::: . : . . .: .: . :. XP_005 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 320 330 340 350 360 320 330 340 350 pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP . : .. .. .:.: : : XP_005 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH 370 380 390 400 410 420 >>XP_005249789 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 377 init1: 377 opt: 444 Z-score: 229.5 bits: 51.3 E(85289): 4.8e-06 Smith-Waterman score: 501; 34.7% identity (52.0% similar) in 352 aa overlap (21-333:71-389) 10 20 30 40 50 pF1KB8 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFE :: .. : : :. : : :::: . XP_005 ADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSA--PPSQPPSLGEPPLHPPPP--Q 50 60 70 80 90 60 70 80 90 pF1KB8 QTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PP------PLPA-APPAPE----- . :. :: .: : : :: :::: :: : :: : .: XP_005 AAPPAPQP-----PQPAPQPPAPT-PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 100 110 120 130 140 150 100 110 120 130 140 pF1KB8 -----FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTA ::::::... : . :..: :. .: :: : : ....: ::: XP_005 VAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSP------P--GQASSKRARTA 160 170 180 190 150 160 170 180 190 200 pF1KB8 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR---- ::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.:.. . . XP_005 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLT 200 210 220 230 240 250 210 220 230 240 250 pF1KB8 ----EPPDGEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGA . :. :. ::: .... . . :: : :. . :: :.. XP_005 SSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPAS 260 270 280 290 300 310 260 270 280 290 300 310 pF1KB8 LS--ADPRPLAVRLEGAGASSPGCALRGAGGL-EPGPLPEDVF-SGRQDSPFLPDLNFFA : : : : : .::: :::: . : . . .: .: . :. XP_005 LPSCAPPPPPQKRYTAAGA--------GAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 320 330 340 350 360 320 330 340 350 pF1KB8 ADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP . : .. .. .:.: : : XP_005 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH 370 380 390 400 410 420 356 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:47:59 2016 done: Sun Nov 6 13:48:00 2016 Total Scan time: 11.120 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]