FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5318, 286 aa 1>>>pF1KE5318 286 - 286 aa - 286 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5919+/-0.000689; mu= 6.9492+/- 0.042 mean_var=155.8566+/-31.043, 0's: 0 Z-trim(116.0): 5 B-trim: 16 in 1/52 Lambda= 0.102733 statistics sampled from 16538 (16540) to 16538 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.508), width: 16 Scan time: 2.720 The best scores are: opt bits E(32554) CCDS11496.1 HEXIM2 gene_id:124790|Hs108|chr17 ( 286) 1969 302.6 2.2e-82 CCDS11495.1 HEXIM1 gene_id:10614|Hs108|chr17 ( 359) 454 78.1 1e-14 >>CCDS11496.1 HEXIM2 gene_id:124790|Hs108|chr17 (286 aa) initn: 1969 init1: 1969 opt: 1969 Z-score: 1592.5 bits: 302.6 E(32554): 2.2e-82 Smith-Waterman score: 1969; 100.0% identity (100.0% similar) in 286 aa overlap (1-286:1-286) 10 20 30 40 50 60 pF1KE5 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPPERHDSGGSLPLTPRMESHSEDEDLAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPPERHDSGGSLPLTPRMESHSEDEDLAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AVGGLGWNSRSPRTQSPGGCSAEAVLARKKHRRRPSKRKRHWRPYLELSWAEKQQRDERQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AVGGLGWNSRSPRTQSPGGCSAEAVLARKKHRRRPSKRKRHWRPYLELSWAEKQQRDERQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 SQRASRVREEMFAKGQPVAPYNTTQFLMNDRDPEEPNLDVPHGISHPGSSGESEAGDSDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SQRASRVREEMFAKGQPVAPYNTTQFLMNDRDPEEPNLDVPHGISHPGSSGESEAGDSDG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 RGRAHGEFQRKDFSETYERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 RGRAHGEFQRKDFSETYERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQAC 190 200 210 220 230 240 250 260 270 280 pF1KE5 TGQQSCRQVEELAAEVQRLRTENQRLRQENQMWNREGCRCDEEPGT :::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TGQQSCRQVEELAAEVQRLRTENQRLRQENQMWNREGCRCDEEPGT 250 260 270 280 >>CCDS11495.1 HEXIM1 gene_id:10614|Hs108|chr17 (359 aa) initn: 775 init1: 396 opt: 454 Z-score: 377.6 bits: 78.1 E(32554): 1e-14 Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (5-272:73-345) 10 20 30 pF1KE5 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP : :: :: : : : :. .. CCDS11 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS-- 50 60 70 80 90 40 50 60 70 80 pF1KE5 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR .::..: ..: : : :: .:.. . .: :: . . :.. CCDS11 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK 100 110 120 130 140 150 90 100 110 120 130 140 pF1KE5 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM :::::::::.::::.:: .:.: ::.. ::.:: ::::.: ::::::::::::::::::: CCDS11 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM 160 170 180 190 200 210 150 160 170 180 190 pF1KE5 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET .:.: :::.: . . : :. : : : ::: : .:: ..::::: CCDS11 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET 220 230 240 250 260 270 200 210 220 230 240 250 pF1KE5 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV :::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :. CCDS11 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL 280 290 300 310 320 260 270 280 pF1KE5 QRLRTENQRLRQENQMWNREGCRCDEEPGT .:::.:: .: ::.. CCDS11 DRLRAENLQLLTENELHRQQERAPLSKFGD 330 340 350 286 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:31:17 2016 done: Tue Nov 8 07:31:18 2016 Total Scan time: 2.720 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]