FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1623, 137 aa 1>>>pF1KE1623 137 - 137 aa - 137 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8452+/-0.000315; mu= 13.4516+/- 0.020 mean_var=57.6212+/-11.175, 0's: 0 Z-trim(115.5): 57 B-trim: 70 in 1/50 Lambda= 0.168960 statistics sampled from 25878 (25938) to 25878 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.304), width: 16 Scan time: 4.550 The best scores are: opt bits E(85289) NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 908 229.0 1.9e-60 NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 506 131.0 5.3e-31 NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 306 82.2 2.4e-16 NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 244 67.0 7.1e-12 NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 242 66.5 1e-11 NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 242 66.5 1e-11 NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 238 65.6 2e-11 NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 233 64.4 5.3e-11 NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 215 60.0 9.6e-10 NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 209 58.5 2.6e-09 NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 204 57.3 6.1e-09 NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 191 54.1 5.5e-08 NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 190 53.9 6.7e-08 XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 190 53.9 8.2e-08 XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 190 53.9 8.3e-08 NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 175 50.2 7.9e-07 XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 175 50.2 8.4e-07 NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 175 50.2 8.4e-07 XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 177 50.8 8.7e-07 NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 168 48.5 2.9e-06 XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 163 47.4 7.7e-06 NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 163 47.4 7.7e-06 XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 163 47.4 7.7e-06 NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 161 46.8 9.2e-06 NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 161 46.8 9.3e-06 NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 160 46.6 1.1e-05 NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 155 45.4 2.6e-05 NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 151 44.4 5.2e-05 XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 146 43.2 0.00014 NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 146 43.2 0.00014 NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 143 42.5 0.00025 XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 143 42.5 0.00027 NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 141 41.9 0.00027 NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 141 42.0 0.00031 XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 141 42.0 0.00031 NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 139 41.4 0.00036 XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 139 41.4 0.00036 NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 139 41.5 0.00043 NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 135 40.5 0.00073 NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 135 40.5 0.00074 NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 133 40.0 0.001 NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 133 40.0 0.0011 NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 129 38.9 0.0015 NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 129 38.9 0.0015 NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 129 39.0 0.0019 NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 129 39.0 0.002 NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 131 39.9 0.0046 >>NP_005055 (OMIM: 602494) C-C motif chemokine 23 isofor (137 aa) initn: 908 init1: 908 opt: 908 Z-score: 1206.3 bits: 229.0 E(85289): 1.9e-60 Smith-Waterman score: 908; 99.3% identity (100.0% similar) in 137 aa overlap (1-137:1-137) 10 20 30 40 50 60 pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ 70 80 90 100 110 120 130 pF1KE1 VCVRMLKLDTRIKTRKN ::.:::::::::::::: NP_005 VCMRMLKLDTRIKTRKN 130 >>NP_665905 (OMIM: 602494) C-C motif chemokine 23 isofor (120 aa) initn: 767 init1: 506 opt: 506 Z-score: 677.6 bits: 131.0 E(85289): 5.3e-31 Smith-Waterman score: 735; 86.1% identity (86.9% similar) in 137 aa overlap (1-137:1-120) 10 20 30 40 50 60 pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH ::::::::::::::::::::::::::::::::::::::::::::: NP_665 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDR-------------- 10 20 30 40 70 80 90 100 110 120 pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 ---FHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ 50 60 70 80 90 100 130 pF1KE1 VCVRMLKLDTRIKTRKN ::.:::::::::::::: NP_665 VCMRMLKLDTRIKTRKN 110 120 >>NP_116741 (OMIM: 601393) C-C motif chemokine 15 prepro (113 aa) initn: 518 init1: 302 opt: 306 Z-score: 414.5 bits: 82.2 E(85289): 2.4e-16 Smith-Waterman score: 492; 63.8% identity (77.2% similar) in 127 aa overlap (1-127:1-109) 10 20 30 40 50 60 pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH ::::::::::::::..:::::. :.:::::.:::::::::::.:. NP_116 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLN--------------- 10 20 30 40 70 80 90 100 110 120 pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ .:: .:::: :: .::::::..:::::.::::::::::::::::. ::.:: :: NP_116 --SFH-FAADCCTSYISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQ 50 60 70 80 90 100 130 pF1KE1 VCVRMLKLDTRIKTRKN :.. :: NP_116 DCMKKLKPYSI 110 >>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa) initn: 268 init1: 237 opt: 244 Z-score: 334.1 bits: 67.0 E(85289): 7.1e-12 Smith-Waterman score: 244; 52.7% identity (77.0% similar) in 74 aa overlap (55-128:20-90) 30 40 50 60 70 80 pF1KE1 KDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSL :.. : :: : . ::.::: :.:: .. NP_002 MQVSTAALAVLLCTMALCNQFSASLAAD---TPTACCFSYTSRQIPQNF 10 20 30 40 90 100 110 120 130 pF1KE1 LESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN . .::::.:.:::::::::::..:. ::.::.. :: : :.: NP_002 IADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA 50 60 70 80 90 >>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa) initn: 268 init1: 237 opt: 242 Z-score: 331.4 bits: 66.5 E(85289): 1e-11 Smith-Waterman score: 242; 56.5% identity (82.3% similar) in 62 aa overlap (67-128:30-91) 40 50 60 70 80 90 pF1KE1 PLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSLLESYFETNSECS : . ::.::: :.:: ... .::::.:.:: NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS 10 20 30 40 50 100 110 120 130 pF1KE1 KPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN ::.::::::.::. ::.::.. :: : :.: NP_001 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA 60 70 80 90 >>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa) initn: 268 init1: 237 opt: 242 Z-score: 331.4 bits: 66.5 E(85289): 1e-11 Smith-Waterman score: 242; 56.5% identity (82.3% similar) in 62 aa overlap (67-128:30-91) 40 50 60 70 80 90 pF1KE1 PLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSLLESYFETNSECS : . ::.::: :.:: ... .::::.:.:: NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS 10 20 30 40 50 100 110 120 130 pF1KE1 KPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN ::.::::::.::. ::.::.. :: : :.: NP_066 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA 60 70 80 90 >>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor (93 aa) initn: 267 init1: 227 opt: 238 Z-score: 326.2 bits: 65.6 E(85289): 2e-11 Smith-Waterman score: 238; 42.1% identity (72.4% similar) in 76 aa overlap (52-127:18-91) 30 40 50 60 70 80 pF1KE1 RVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIP .: . : . .: . .::..:: .:: NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPS--ECCFTYTTYKIP 10 20 30 40 90 100 110 120 130 pF1KE1 CSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN . . .:.::::.:::::..:.::.:. :.::::: :: .. .: NP_116 RQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 50 60 70 80 90 >>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor (109 aa) initn: 267 init1: 227 opt: 233 Z-score: 318.6 bits: 64.4 E(85289): 5.3e-11 Smith-Waterman score: 253; 35.9% identity (65.6% similar) in 128 aa overlap (1-127:1-107) 10 20 30 40 50 pF1KE1 MKVSVAALSCLMLVT-ALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLS ::.::::. ..:.: :::.... .... . . :. :. :. :: NP_116 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLK---LVG-------GP----- 10 20 30 40 60 70 80 90 100 110 pF1KE1 HAAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQV .: . .::..:: .:: . . .:.::::.:::::..:.::.:. :.::::: : NP_116 ----YHPS--ECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWV 50 60 70 80 90 120 130 pF1KE1 QVCVRMLKLDTRIKTRKN : .. .: NP_116 QDYIKDMKEN 100 >>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa) initn: 241 init1: 202 opt: 215 Z-score: 295.9 bits: 60.0 E(85289): 9.6e-10 Smith-Waterman score: 215; 43.2% identity (74.3% similar) in 74 aa overlap (56-129:20-92) 30 40 50 60 70 80 pF1KE1 DAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSLL ..:: : .: ::.::: :..: ... NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTA-CCFSYTARKLPRNFV 10 20 30 40 90 100 110 120 130 pF1KE1 ESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN .:.::.: ::.:.:.: ::.:.. ::.::.. :: : :.:. NP_996 VDYYETSSLCSQPAVVFQTKRGKQVCADPSESWVQEYVYDLELN 50 60 70 80 90 >>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur (89 aa) initn: 235 init1: 205 opt: 209 Z-score: 288.2 bits: 58.5 E(85289): 2.6e-09 Smith-Waterman score: 209; 43.2% identity (70.3% similar) in 74 aa overlap (56-129:15-88) 30 40 50 60 70 80 pF1KE1 DAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSLL :.: : ... ::. :: .:: ... NP_002 MKGLAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFI 10 20 30 40 90 100 110 120 130 pF1KE1 ESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN .: ::. .: :::::.:::.::..::.:. : :: . :::. NP_002 VDYSETSPQCPKPGVILLTKRGRQICADPNKKWVQKYISDLKLNA 50 60 70 80 137 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:52:59 2016 done: Sun Nov 6 13:53:00 2016 Total Scan time: 4.550 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]