FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1623, 137 aa 1>>>pF1KE1623 137 - 137 aa - 137 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8536+/-0.000681; mu= 13.4343+/- 0.041 mean_var=57.2354+/-11.235, 0's: 0 Z-trim(109.2): 39 B-trim: 181 in 1/49 Lambda= 0.169528 statistics sampled from 10695 (10735) to 10695 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.33), width: 16 Scan time: 1.750 The best scores are: opt bits E(32554) CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17 ( 137) 908 229.6 4.7e-61 CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17 ( 120) 506 131.2 1.7e-31 CCDS11304.1 CCL15 gene_id:6359|Hs108|chr17 ( 113) 306 82.3 8.5e-17 CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 244 67.1 2.6e-12 CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 242 66.6 3.7e-12 CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 238 65.6 7.3e-12 CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 233 64.4 2e-11 >>CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17 (137 aa) initn: 908 init1: 908 opt: 908 Z-score: 1209.5 bits: 229.6 E(32554): 4.7e-61 Smith-Waterman score: 908; 99.3% identity (100.0% similar) in 137 aa overlap (1-137:1-137) 10 20 30 40 50 60 pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ 70 80 90 100 110 120 130 pF1KE1 VCVRMLKLDTRIKTRKN ::.:::::::::::::: CCDS11 VCMRMLKLDTRIKTRKN 130 >>CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17 (120 aa) initn: 767 init1: 506 opt: 506 Z-score: 679.0 bits: 131.2 E(32554): 1.7e-31 Smith-Waterman score: 735; 86.1% identity (86.9% similar) in 137 aa overlap (1-137:1-120) 10 20 30 40 50 60 pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH ::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDR-------------- 10 20 30 40 70 80 90 100 110 120 pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 ---FHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ 50 60 70 80 90 100 130 pF1KE1 VCVRMLKLDTRIKTRKN ::.:::::::::::::: CCDS59 VCMRMLKLDTRIKTRKN 110 120 >>CCDS11304.1 CCL15 gene_id:6359|Hs108|chr17 (113 aa) initn: 518 init1: 302 opt: 306 Z-score: 415.0 bits: 82.3 E(32554): 8.5e-17 Smith-Waterman score: 492; 63.8% identity (77.2% similar) in 127 aa overlap (1-127:1-109) 10 20 30 40 50 60 pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH ::::::::::::::..:::::. :.:::::.:::::::::::.:. CCDS11 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLN--------------- 10 20 30 40 70 80 90 100 110 120 pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ .:: .:::: :: .::::::..:::::.::::::::::::::::. ::.:: :: CCDS11 --SFH-FAADCCTSYISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQ 50 60 70 80 90 100 130 pF1KE1 VCVRMLKLDTRIKTRKN :.. :: CCDS11 DCMKKLKPYSI 110 >>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa) initn: 268 init1: 237 opt: 244 Z-score: 334.4 bits: 67.1 E(32554): 2.6e-12 Smith-Waterman score: 244; 52.7% identity (77.0% similar) in 74 aa overlap (55-128:20-90) 30 40 50 60 70 80 pF1KE1 KDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSL :.. : :: : . ::.::: :.:: .. CCDS11 MQVSTAALAVLLCTMALCNQFSASLAAD---TPTACCFSYTSRQIPQNF 10 20 30 40 90 100 110 120 130 pF1KE1 LESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN . .::::.:.:::::::::::..:. ::.::.. :: : :.: CCDS11 IADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA 50 60 70 80 90 >>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa) initn: 268 init1: 237 opt: 242 Z-score: 331.7 bits: 66.6 E(32554): 3.7e-12 Smith-Waterman score: 242; 56.5% identity (82.3% similar) in 62 aa overlap (67-128:30-91) 40 50 60 70 80 90 pF1KE1 PLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSLLESYFETNSECS : . ::.::: :.:: ... .::::.:.:: CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS 10 20 30 40 50 100 110 120 130 pF1KE1 KPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN ::.::::::.::. ::.::.. :: : :.: CCDS32 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA 60 70 80 90 >>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa) initn: 267 init1: 227 opt: 238 Z-score: 326.4 bits: 65.6 E(32554): 7.3e-12 Smith-Waterman score: 238; 42.1% identity (72.4% similar) in 76 aa overlap (52-127:18-91) 30 40 50 60 70 80 pF1KE1 RVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIP .: . : . .: . .::..:: .:: CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPS--ECCFTYTTYKIP 10 20 30 40 90 100 110 120 130 pF1KE1 CSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN . . .:.::::.:::::..:.::.:. :.::::: :: .. .: CCDS32 RQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 50 60 70 80 90 >>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 (109 aa) initn: 267 init1: 227 opt: 233 Z-score: 318.8 bits: 64.4 E(32554): 2e-11 Smith-Waterman score: 253; 35.9% identity (65.6% similar) in 128 aa overlap (1-127:1-107) 10 20 30 40 50 pF1KE1 MKVSVAALSCLMLVT-ALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLS ::.::::. ..:.: :::.... .... . . :. :. :. :: CCDS45 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLK---LVG-------GP----- 10 20 30 40 60 70 80 90 100 110 pF1KE1 HAAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQV .: . .::..:: .:: . . .:.::::.:::::..:.::.:. :.::::: : CCDS45 ----YHPS--ECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWV 50 60 70 80 90 120 130 pF1KE1 QVCVRMLKLDTRIKTRKN : .. .: CCDS45 QDYIKDMKEN 100 137 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:52:58 2016 done: Sun Nov 6 13:52:58 2016 Total Scan time: 1.750 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]