FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3188, 432 aa 1>>>pF1KE3188 432 - 432 aa - 432 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7385+/-0.000905; mu= 12.2486+/- 0.054 mean_var=160.4594+/-34.331, 0's: 0 Z-trim(111.9): 132 B-trim: 479 in 1/53 Lambda= 0.101249 statistics sampled from 12597 (12750) to 12597 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.392), width: 16 Scan time: 3.470 The best scores are: opt bits E(32554) CCDS11262.1 RNF135 gene_id:84282|Hs108|chr17 ( 432) 2982 447.5 1.2e-125 CCDS54104.1 RNF135 gene_id:84282|Hs108|chr17 ( 286) 1558 239.3 3.6e-63 CCDS11263.1 RNF135 gene_id:84282|Hs108|chr17 ( 210) 1201 187.0 1.5e-47 >>CCDS11262.1 RNF135 gene_id:84282|Hs108|chr17 (432 aa) initn: 2982 init1: 2982 opt: 2982 Z-score: 2369.5 bits: 447.5 E(32554): 1.2e-125 Smith-Waterman score: 2982; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432) 10 20 30 40 50 60 pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 QVLCSQALSSGKHYWEVDTRNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQLSAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QVLCSQALSSGKHYWEVDTRNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQLSAW 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 HMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 HMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLH 370 380 390 400 410 420 430 pF1KE3 PGNYLIIKQVKV :::::::::::: CCDS11 PGNYLIIKQVKV 430 >>CCDS54104.1 RNF135 gene_id:84282|Hs108|chr17 (286 aa) initn: 1558 init1: 1558 opt: 1558 Z-score: 1247.5 bits: 239.3 E(32554): 3.6e-63 Smith-Waterman score: 1558; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230) 10 20 30 40 50 60 pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL ::::::::::::::::::::::::::::::::::::::::::::::: :: CCDS54 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGSLLPRLECSGTIT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS CCDS54 AASISQAQENSWKPRLPPHAHCLTRATLHSGELLGLLSGPSIQPLT 250 260 270 280 >>CCDS11263.1 RNF135 gene_id:84282|Hs108|chr17 (210 aa) initn: 1201 init1: 1201 opt: 1201 Z-score: 967.3 bits: 187.0 E(32554): 1.5e-47 Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172) 10 20 30 40 50 60 pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL CCDS11 PPHAHCLTRATLHSGELLGLLSGPSIQPLT 190 200 210 432 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:35:03 2016 done: Sat Nov 5 23:35:04 2016 Total Scan time: 3.470 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]