FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3754, 249 aa 1>>>pF1KE3754 249 - 249 aa - 249 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2863+/-0.000283; mu= 16.3599+/- 0.018 mean_var=85.3479+/-16.830, 0's: 0 Z-trim(119.9): 3 B-trim: 512 in 1/56 Lambda= 0.138828 statistics sampled from 34492 (34496) to 34492 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.404), width: 16 Scan time: 5.570 The best scores are: opt bits E(85289) NP_003800 (OMIM: 602695) tumor necrosis factor lig ( 249) 1640 337.4 1.4e-92 >>NP_003800 (OMIM: 602695) tumor necrosis factor ligand (249 aa) initn: 1640 init1: 1640 opt: 1640 Z-score: 1783.0 bits: 337.4 E(85289): 1.4e-92 Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249) 10 20 30 40 50 60 pF1KE3 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL 190 200 210 220 230 240 pF1KE3 TYFGLFQVH ::::::::: NP_003 TYFGLFQVH 249 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:05:58 2016 done: Sun Nov 6 07:05:58 2016 Total Scan time: 5.570 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]