(Circular) (Six-base) MAPSORT of: pFN21AE3964.seq Check: 3526 from: 1 to: 5620 pFN21AE3964 5620 bp With 182 enzymes: SgfI * March 28, 2012 11:53 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3430 278 Size: 53 83 186 936 1894 2468 Fragments arranged by size: 2468 1894 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2963 1937 Size: 1026 4594 Acc65I G'GTAC_C Cuts at: 2941 2941 Size: 5620 AclI AA'CG_TT Cuts at: 1563 2715 3747 4120 1563 Size: 1152 1032 373 3063 Fragments arranged by size: 3063 1152 1032 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2613 3683 5067 5335 1632 Size: 981 1070 1384 268 1917 Fragments arranged by size: 1917 1384 1070 981 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5423 AflIII A'CryG_T Cuts at: 1203 4519 5496 1203 Size: 3316 977 1327 Fragments arranged by size: 3316 1327 977 AgeI A'CCGG_T Cuts at: 4451 4451 Size: 5620 AhdI GACnn_n'nnGTC Cuts at: 4349 4349 Size: 5620 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5620 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5620 AlwNI CAG_nnn'CTG Cuts at: 2321 2365 3363 4935 2321 Size: 44 998 1572 3006 Fragments arranged by size: 3006 1572 998 44 ApaLI G'TGCA_C Cuts at: 3677 4833 3677 Size: 1156 4464 ApoI r'AATT_y Cuts at: 1493 2450 2895 2929 3155 3307 5416 1493 Size: 957 445 34 226 152 2109 1697 Fragments arranged by size: 2109 1697 957 445 226 152 34 AseI AT'TA_AT Cuts at: 160 1032 4174 160 Size: 872 3142 1606 Fragments arranged by size: 3142 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5620 AvaI C'yCGr_G Cuts at: 1870 1943 2945 1870 Size: 73 1002 4545 Fragments arranged by size: 4545 1002 73 BamHI G'GATC_C Cuts at: 2950 3317 2950 Size: 367 5253 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2941 4396 618 Size: 325 217 627 1154 1455 1842 Fragments arranged by size: 1842 1455 1154 627 325 217 BanII G_rGCy'C Cuts at: 1391 2939 1391 Size: 1548 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4649 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3811 3845 1903 Size: 34 1874 34 3678 Fragments arranged by size: 3678 1874 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3512 4722 3512 Size: 1210 4410 BclI T'GATC_A Cuts at: 1548 2818 1548 Size: 1270 4350 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2675 4231 136 Size: 107 122 71 631 605 1003 1556 1525 Fragments arranged by size: 1556 1525 1003 631 605 122 107 71 BglII A'GATC_T Cuts at: 2649 5615 2649 Size: 2966 2654 BlpI GC'TnA_GC Cuts at: 2687 3037 2687 Size: 350 5270 Bme1580I G_kGCm'C Cuts at: 1790 3681 4837 1790 Size: 1891 1156 2573 Fragments arranged by size: 2573 1891 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5620 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2353 3351 4309 Size: 416 53 83 399 24 936 998 958 Cuts at: 4309 442 Size: 1753 Fragments arranged by size: 1753 998 958 936 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5620 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2204 4280 1239 Size: 965 2076 2579 Fragments arranged by size: 2579 2076 965 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3745 4610 4908 3745 Size: 865 298 4457 Fragments arranged by size: 4457 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4283 882 Size: 617 2784 2219 Fragments arranged by size: 2784 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3411 493 Size: 711 2207 2702 Fragments arranged by size: 2702 2207 711 BsaBI GATnn'nnATC Cuts at: 5614 5614 Size: 5620 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3427 3809 4444 275 Size: 53 83 186 936 1894 382 635 1451 Fragments arranged by size: 1894 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4053 4451 4725 4872 5283 4053 Size: 398 274 147 411 4390 Fragments arranged by size: 4390 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5395 Fragments arranged by size: 5395 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5620 BseYI C'CCAG_C Cuts at: 2197 2610 4823 5319 2197 Size: 413 2213 496 2498 Fragments arranged by size: 2498 2213 496 413 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5047 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3070 3831 4859 1540 Size: 275 186 1069 761 1028 2301 Fragments arranged by size: 2301 1069 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3681 3766 4837 3681 Size: 85 1071 4464 Fragments arranged by size: 4464 1071 85 BsmI GAATG_Cn' Cuts at: 2720 3131 3224 2720 Size: 411 93 5116 Fragments arranged by size: 5116 411 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2939 3681 3766 4837 1391 Size: 399 1149 742 85 1071 2174 Fragments arranged by size: 2174 1149 1071 742 399 85 BspEI T'CCGG_A Cuts at: 5283 5283 Size: 5620 BspHI T'CATG_A Cuts at: 3509 5239 3509 Size: 1730 3890 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2975 844 Size: 2131 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2691 3507 1394 Size: 429 868 816 3507 Fragments arranged by size: 3507 868 816 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2235 4115 4289 65 Size: 1183 987 1880 174 1396 Fragments arranged by size: 1880 1396 1183 987 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4264 4451 1700 Size: 110 2454 187 2869 Fragments arranged by size: 2869 2454 187 110 BsrGI T'GTAC_A Cuts at: 96 2659 96 Size: 2563 3057 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5620 BssSI C'ACGA_G Cuts at: 2440 3680 4692 2440 Size: 1240 1012 3368 Fragments arranged by size: 3368 1240 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5620 BstBI TT'CG_AA Cuts at: 4424 4424 Size: 5620 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5620 BstYI r'GATC_y Cuts at: 1972 2649 2950 3317 3702 3719 5171 5257 5269 Size: 677 301 367 385 17 1452 86 12 Cuts at: 5269 5615 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 677 385 367 346 301 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5068 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4881 Fragments arranged by size: 4881 683 56 BtsI GCAGTG_nn' Cuts at: 2622 3136 3930 3950 2622 Size: 514 794 20 4292 Fragments arranged by size: 4292 794 514 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5620 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5585 DraI TTT'AAA Cuts at: 2924 2924 Size: 5620 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4627 809 Size: 507 3311 1802 Fragments arranged by size: 3311 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2367 2692 3067 Size: 54 1425 50 275 18 537 325 375 Cuts at: 3067 3956 5585 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 537 375 325 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3067 1537 Size: 275 1255 4090 Fragments arranged by size: 4090 1255 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2033 3550 1353 Size: 680 1517 3423 Fragments arranged by size: 3423 1517 680 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4207 4581 4727 387 Size: 1064 138 2618 374 146 1280 Fragments arranged by size: 2618 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2204 2613 3683 4280 5067 5335 1239 Size: 393 572 409 1070 597 787 268 1524 Fragments arranged by size: 1524 1070 787 597 572 409 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2135 2135 Size: 5620 EcoO109I rG'GnC_Cy Cuts at: 2318 2318 Size: 5620 EcoRI G'AATT_C Cuts at: 2929 3307 2929 Size: 378 5242 FspI TGC'GCA Cuts at: 4126 4126 Size: 5620 HaeII r_GCGC'y Cuts at: 1678 4767 1678 Size: 3089 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4261 4293 4335 4367 1373 Size: 32 135 32 2689 32 42 32 2626 Fragments arranged by size: 2689 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2964 3210 669 Size: 988 281 1026 246 3079 Fragments arranged by size: 3079 1026 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5620 HpaI GTT'AAC Cuts at: 3210 3210 Size: 5620 KpnI G_GTAC'C Cuts at: 2945 2945 Size: 5620 MfeI C'AATT_G Cuts at: 2916 3219 2916 Size: 303 5317 MluI A'CGCG_T Cuts at: 5496 5496 Size: 5620 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2767 2860 4734 4918 1305 Size: 1462 93 1874 184 2007 Fragments arranged by size: 2007 1874 1462 184 93 MscI TGG'CCA Cuts at: 10 64 1489 1832 2369 10 Size: 54 1425 343 537 3261 Fragments arranged by size: 3261 1425 537 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2052 2904 3578 3937 4096 518 Size: 648 886 852 674 359 159 2042 Fragments arranged by size: 2042 886 852 674 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2197 3036 3713 4861 5106 1606 Size: 591 839 677 1148 245 2120 Fragments arranged by size: 2120 1148 839 677 591 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5068 NdeI CA'TA_TG Cuts at: 387 387 Size: 5620 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5620 NotI GC'GGCC_GC Cuts at: 3067 3067 Size: 5620 NspI r_CATG'y Cuts at: 1132 1229 2669 2978 4523 1132 Size: 97 1440 309 1545 2229 Fragments arranged by size: 2229 1545 1440 309 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5620 PciI A'CATG_T Cuts at: 4519 4519 Size: 5620 PflMI CCAn_nnn'nTGG Cuts at: 1108 2365 1108 Size: 1257 4363 PmeI GTTT'AAAC Cuts at: 2924 2924 Size: 5620 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3689 3721 5202 5234 3689 Size: 32 1481 32 4075 Fragments arranged by size: 4075 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2318 2318 Size: 5620 PshAI GACnn'nnGTC Cuts at: 1613 2108 1613 Size: 495 5125 PsiI TTA'TAA Cuts at: 3190 3190 Size: 5620 PstI C_TGCA'G Cuts at: 830 2972 830 Size: 2142 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5620 PvuII CAG'CTG Cuts at: 2197 2197 Size: 5620 SalI G'TCGA_C Cuts at: 1936 2962 1936 Size: 1026 4594 SbfI CC_TGCA'GG Cuts at: 2972 2972 Size: 5620 ScaI AGT'ACT Cuts at: 3868 5580 3868 Size: 1712 3908 SexAI A'CCwGG_T Cuts at: 2130 2130 Size: 5620 SfcI C'TryA_G Cuts at: 826 1045 2171 2968 4103 4784 4975 826 Size: 219 1126 797 1135 681 191 1471 Fragments arranged by size: 1471 1135 1126 797 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5620 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5620 SmaI CCC'GGG Cuts at: 1872 2947 1872 Size: 1075 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3724 4625 4887 820 Size: 197 926 1781 901 262 1553 Fragments arranged by size: 1781 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3411 493 Size: 2918 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5620 SphI G_CATG'C Cuts at: 1132 2978 1132 Size: 1846 3774 SspI AAT'ATT Cuts at: 5 52 2429 2524 3544 5 Size: 47 2377 95 1020 2081 Fragments arranged by size: 2377 2081 1020 95 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5620 StyI C'CwwG_G Cuts at: 513 1065 3059 513 Size: 552 1994 3074 Fragments arranged by size: 3074 1994 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2695 3647 3664 3817 4002 4447 325 Size: 1255 1115 952 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1115 952 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2659 3866 5578 Size: 274 80 33 51 1443 682 1207 1712 Cuts at: 5578 96 Size: 138 Fragments arranged by size: 1712 1443 1207 682 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2137 2159 2169 2191 2732 2764 5580 5612 2137 Size: 22 10 22 541 32 2816 32 2145 Fragments arranged by size: 2816 2145 541 32 32 22 22 10 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5620 XbaI T'CTAG_A Cuts at: 2956 2956 Size: 5620 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5620 XmaI C'CCGG_G Cuts at: 1870 2945 1870 Size: 1075 4545 XmnI GAAnn'nnTTC Cuts at: 2860 3749 2860 Size: 889 4731 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3428 276 Size: 53 83 186 936 1894 2468 Fragments arranged by size: 2468 1894 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI XcmI