FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5660, 508 aa 1>>>pF1KE5660 508 - 508 aa - 508 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4722+/-0.000382; mu= 12.4378+/- 0.024 mean_var=90.2688+/-17.760, 0's: 0 Z-trim(114.5): 51 B-trim: 0 in 0/53 Lambda= 0.134991 statistics sampled from 24436 (24444) to 24436 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.287), width: 16 Scan time: 6.310 The best scores are: opt bits E(85289) NP_001135915 (OMIM: 609842,616460) enhancer of mRN ( 508) 3460 684.2 2.4e-196 NP_001135916 (OMIM: 609842,616460) enhancer of mRN ( 508) 3460 684.2 2.4e-196 NP_079359 (OMIM: 609842,616460) enhancer of mRNA-d ( 508) 3460 684.2 2.4e-196 XP_011520394 (OMIM: 609842,616460) PREDICTED: enha ( 325) 2220 442.6 8.2e-124 >>NP_001135915 (OMIM: 609842,616460) enhancer of mRNA-de (508 aa) initn: 3460 init1: 3460 opt: 3460 Z-score: 3645.9 bits: 684.2 E(85289): 2.4e-196 Smith-Waterman score: 3460; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508) 10 20 30 40 50 60 pF1KE5 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 430 440 450 460 470 480 490 500 pF1KE5 IPQQVFQEVGINYHSPFGCKFVIPLHSA :::::::::::::::::::::::::::: NP_001 IPQQVFQEVGINYHSPFGCKFVIPLHSA 490 500 >>NP_001135916 (OMIM: 609842,616460) enhancer of mRNA-de (508 aa) initn: 3460 init1: 3460 opt: 3460 Z-score: 3645.9 bits: 684.2 E(85289): 2.4e-196 Smith-Waterman score: 3460; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508) 10 20 30 40 50 60 pF1KE5 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 430 440 450 460 470 480 490 500 pF1KE5 IPQQVFQEVGINYHSPFGCKFVIPLHSA :::::::::::::::::::::::::::: NP_001 IPQQVFQEVGINYHSPFGCKFVIPLHSA 490 500 >>NP_079359 (OMIM: 609842,616460) enhancer of mRNA-decap (508 aa) initn: 3460 init1: 3460 opt: 3460 Z-score: 3645.9 bits: 684.2 E(85289): 2.4e-196 Smith-Waterman score: 3460; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508) 10 20 30 40 50 60 pF1KE5 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 430 440 450 460 470 480 490 500 pF1KE5 IPQQVFQEVGINYHSPFGCKFVIPLHSA :::::::::::::::::::::::::::: NP_079 IPQQVFQEVGINYHSPFGCKFVIPLHSA 490 500 >>XP_011520394 (OMIM: 609842,616460) PREDICTED: enhancer (325 aa) initn: 2220 init1: 2220 opt: 2220 Z-score: 2343.9 bits: 442.6 E(85289): 8.2e-124 Smith-Waterman score: 2220; 100.0% identity (100.0% similar) in 325 aa overlap (184-508:1-325) 160 170 180 190 200 210 pF1KE5 SFRRRHNSWSSSSRHPNQATPKKSGLKNGQMKNKDDECFGDDIEEIPDTDFDFEGNLALF :::::::::::::::::::::::::::::: XP_011 MKNKDDECFGDDIEEIPDTDFDFEGNLALF 10 20 30 220 230 240 250 260 270 pF1KE5 DKAAVFEEIDTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVPHNVSKEFCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DKAAVFEEIDTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVPHNVSKEFCT 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE5 DSGLVVPSISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DSGLVVPSISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQ 100 110 120 130 140 150 340 350 360 370 380 390 pF1KE5 RPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQV 160 170 180 190 200 210 400 410 420 430 440 450 pF1KE5 SSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGI 220 230 240 250 260 270 460 470 480 490 500 pF1KE5 DAKWSLALGLPLPLGEHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIPLHSA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DAKWSLALGLPLPLGEHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIPLHSA 280 290 300 310 320 508 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:37:38 2016 done: Tue Nov 8 05:37:39 2016 Total Scan time: 6.310 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]