FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5637, 504 aa 1>>>pF1KE5637 504 - 504 aa - 504 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6380+/-0.00117; mu= 17.1563+/- 0.071 mean_var=78.1174+/-15.669, 0's: 0 Z-trim(102.5): 22 B-trim: 2 in 1/47 Lambda= 0.145111 statistics sampled from 6959 (6965) to 6959 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.562), E-opt: 0.2 (0.214), width: 16 Scan time: 2.420 The best scores are: opt bits E(32554) CCDS9652.1 SRP54 gene_id:6729|Hs108|chr14 ( 504) 3269 694.4 7.4e-200 CCDS53893.1 SRP54 gene_id:6729|Hs108|chr14 ( 455) 2938 625.1 4.9e-179 >>CCDS9652.1 SRP54 gene_id:6729|Hs108|chr14 (504 aa) initn: 3269 init1: 3269 opt: 3269 Z-score: 3701.6 bits: 694.4 E(32554): 7.4e-200 Smith-Waterman score: 3269; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504) 10 20 30 40 50 60 pF1KE5 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL 430 440 450 460 470 480 490 500 pF1KE5 QSMMRQFQQGAAGNMKGMMGFNNM :::::::::::::::::::::::: CCDS96 QSMMRQFQQGAAGNMKGMMGFNNM 490 500 >>CCDS53893.1 SRP54 gene_id:6729|Hs108|chr14 (455 aa) initn: 2938 init1: 2938 opt: 2938 Z-score: 3327.7 bits: 625.1 E(32554): 4.9e-179 Smith-Waterman score: 2938; 99.8% identity (100.0% similar) in 448 aa overlap (57-504:8-455) 30 40 50 60 70 80 pF1KE5 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKL .::::::::::::::::::::::::::::: CCDS53 MPPLSMKRSAIDLEEMASGLNKRKMIQHAVFKELVKL 10 20 30 90 100 110 120 130 140 pF1KE5 VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE5 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE5 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE5 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE 280 290 300 310 320 330 390 400 410 420 430 440 pF1KE5 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 340 350 360 370 380 390 450 460 470 480 490 500 pF1KE5 SKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 SKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM 400 410 420 430 440 450 504 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:25:11 2016 done: Tue Nov 8 05:25:11 2016 Total Scan time: 2.420 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]