Result of FASTA (omim) for
pFN21AE9612
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9612, 312 aa
1>>>pF1KE9612 312 - 312 aa - 312 aa
Library: /omim/omim.rfq.tfa
61573307 residues in 86401 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8856+/-0.00032; mu= 13.5556+/- 0.020
mean_var=82.9253+/-16.330, 0's: 0 Z-trim(115.9): 12 B-trim: 24 in 2/54
Lambda= 0.140842
statistics sampled from 26822 (26834) to 26822 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.311), width: 16
Scan time: 8.110
The best scores are: opt bits E(86401)
NP_078846 (OMIM: 610181,610326) ribonuclease H2 su ( 312) 2045 425.0 9.7e-119
XP_006719930 (OMIM: 610181,610326) PREDICTED: ribo ( 306) 1900 395.5 7.1e-110
XP_011533533 (OMIM: 610181,610326) PREDICTED: ribo ( 259) 1652 345.1 9.1e-95
NP_001135751 (OMIM: 610181,610326) ribonuclease H2 ( 257) 1645 343.7 2.4e-94
XP_016876236 (OMIM: 610181,610326) PREDICTED: ribo ( 258) 1645 343.7 2.4e-94
XP_011533532 (OMIM: 610181,610326) PREDICTED: ribo ( 261) 1645 343.7 2.5e-94
XP_011533531 (OMIM: 610181,610326) PREDICTED: ribo ( 266) 1645 343.7 2.5e-94
XP_011533535 (OMIM: 610181,610326) PREDICTED: ribo ( 176) 1068 226.3 3.5e-59
>>NP_078846 (OMIM: 610181,610326) ribonuclease H2 subuni (312 aa)
initn: 2045 init1: 2045 opt: 2045 Z-score: 2252.8 bits: 425.0 E(86401): 9.7e-119
Smith-Waterman score: 2045; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
250 260 270 280 290 300
310
pF1KE9 FGVKNKKKIGKV
::::::::::::
NP_078 FGVKNKKKIGKV
310
>>XP_006719930 (OMIM: 610181,610326) PREDICTED: ribonucl (306 aa)
initn: 1900 init1: 1900 opt: 1900 Z-score: 2093.7 bits: 395.5 E(86401): 7.1e-110
Smith-Waterman score: 1900; 100.0% identity (100.0% similar) in 291 aa overlap (22-312:16-306)
10 20 30 40 50 60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
:::::::::::::::::::::::::::::::::::::::
XP_006 MTQLKEFGLGSASQKEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
10 20 30 40 50
70 80 90 100 110 120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
240 250 260 270 280 290
310
pF1KE9 FGVKNKKKIGKV
::::::::::::
XP_006 FGVKNKKKIGKV
300
>>XP_011533533 (OMIM: 610181,610326) PREDICTED: ribonucl (259 aa)
initn: 1645 init1: 1645 opt: 1652 Z-score: 1822.4 bits: 345.1 E(86401): 9.1e-95
Smith-Waterman score: 1652; 97.3% identity (98.8% similar) in 256 aa overlap (1-256:1-255)
10 20 30 40 50 60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
::::::: :. ..:.
XP_011 LPNPPSK-IQRMEKPIINHT
250
>>NP_001135751 (OMIM: 610181,610326) ribonuclease H2 sub (257 aa)
initn: 1645 init1: 1645 opt: 1645 Z-score: 1814.8 bits: 343.7 E(86401): 2.4e-94
Smith-Waterman score: 1645; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
:::::::
NP_001 LPNPPSKMAAQRQKRGK
250
>>XP_016876236 (OMIM: 610181,610326) PREDICTED: ribonucl (258 aa)
initn: 1645 init1: 1645 opt: 1645 Z-score: 1814.8 bits: 343.7 E(86401): 2.4e-94
Smith-Waterman score: 1645; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
:::::::
XP_016 LPNPPSKLGLPTGHFVKS
250
>>XP_011533532 (OMIM: 610181,610326) PREDICTED: ribonucl (261 aa)
initn: 1645 init1: 1645 opt: 1645 Z-score: 1814.7 bits: 343.7 E(86401): 2.5e-94
Smith-Waterman score: 1645; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
:::::::
XP_011 LPNPPSKAATHSSSAAGMFIS
250 260
>>XP_011533531 (OMIM: 610181,610326) PREDICTED: ribonucl (266 aa)
initn: 1645 init1: 1645 opt: 1645 Z-score: 1814.6 bits: 343.7 E(86401): 2.5e-94
Smith-Waterman score: 1645; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
:::::::
XP_011 LPNPPSKLGLPTGHFVMAAQRQKRGK
250 260
>>XP_011533535 (OMIM: 610181,610326) PREDICTED: ribonucl (176 aa)
initn: 1068 init1: 1068 opt: 1068 Z-score: 1183.6 bits: 226.3 E(86401): 3.5e-59
Smith-Waterman score: 1068; 100.0% identity (100.0% similar) in 168 aa overlap (145-312:9-176)
120 130 140 150 160 170
pF1KE9 QVVVDNVFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQT
::::::::::::::::::::::::::::::
XP_011 MGSFHFPSKGNPEIDNKKYYKYSKEKTLKWLEKKVNQT
10 20 30
180 190 200 210 220 230
pF1KE9 VAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKL
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE9 PEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGM
100 110 120 130 140 150
300 310
pF1KE9 KSIDTFFGVKNKKKIGKV
::::::::::::::::::
XP_011 KSIDTFFGVKNKKKIGKV
160 170
312 residues in 1 query sequences
61573307 residues in 86401 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Mar 10 10:44:10 2017 done: Fri Mar 10 10:44:11 2017
Total Scan time: 8.110 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]