FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5871, 464 aa 1>>>pF1KB5871 464 - 464 aa - 464 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.5846+/-0.00129; mu= -12.6669+/- 0.074 mean_var=462.0748+/-107.605, 0's: 0 Z-trim(110.8): 288 B-trim: 0 in 0/50 Lambda= 0.059665 statistics sampled from 11571 (11872) to 11571 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.365), width: 16 Scan time: 2.600 The best scores are: opt bits E(32554) CCDS9317.1 CDK8 gene_id:1024|Hs108|chr13 ( 464) 3211 291.4 1.4e-78 CCDS5085.1 CDK19 gene_id:23097|Hs108|chr6 ( 502) 2453 226.2 6.3e-59 CCDS75503.1 CDK19 gene_id:23097|Hs108|chr6 ( 442) 2078 193.8 3e-49 >>CCDS9317.1 CDK8 gene_id:1024|Hs108|chr13 (464 aa) initn: 3211 init1: 3211 opt: 3211 Z-score: 1524.4 bits: 291.4 E(32554): 1.4e-78 Smith-Waterman score: 3211; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464) 10 20 30 40 50 60 pF1KB5 MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 MSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 MSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 VQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 VQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 NSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 NSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQED 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 IKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 IKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 KVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 KVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 EEEPDDKGDKKNQQQQQGNNHTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 EEEPDDKGDKKNQQQQQGNNHTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTS 370 380 390 400 410 420 430 440 450 460 pF1KB5 DYQRSNPHAAYPNPGPSTSQPQSSMGYSATSQQPPQYSHQTHRY :::::::::::::::::::::::::::::::::::::::::::: CCDS93 DYQRSNPHAAYPNPGPSTSQPQSSMGYSATSQQPPQYSHQTHRY 430 440 450 460 >>CCDS5085.1 CDK19 gene_id:23097|Hs108|chr6 (502 aa) initn: 2629 init1: 2400 opt: 2453 Z-score: 1171.4 bits: 226.2 E(32554): 6.3e-59 Smith-Waterman score: 2552; 77.9% identity (87.2% similar) in 493 aa overlap (1-457:1-493) 10 20 30 40 50 60 pF1KB5 MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS ::::::.::..:::::::::::::::::::::::::::.::::::.:.:::::::::::: CCDS50 MDYDFKAKLAAERERVEDLFEYEGCKVGRGTYGHVYKARRKDGKDEKEYALKQIEGTGIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 MSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKP :::::::::::::::::::.::::::::.::::::::::::::::::::::::::::::: CCDS50 MSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 VQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLF .::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 MQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 NSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 NSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQED 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 IKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKH ::::::.:::::::::.:::::::::::::.::::. ::.:::::.::.: ::::::::: CCDS50 IKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 KVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLT :::::::.: :::::::::: ::::::::.::::: :::::: ::::::::::::::::. CCDS50 KVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYFQEDPLPTLDVFAGCQIPYPKREFLN 310 320 330 340 350 360 370 380 pF1KB5 EEEPDDKGDKKNQQQQ-----------------------QGNNHTNGT-GHPG------- :..:..::::..:::: :....:::: : : CCDS50 EDDPEEKGDKNQQQQQNQHQQPTAPPQQAAAPPQAPPPQQNSTQTNGTAGGAGAGVGGTG 370 380 390 400 410 420 390 400 410 420 430 440 pF1KB5 -----NQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSS .:::: .: :: :: :. : ..::: .: ::::.:. . : . ..:: ::. CCDS50 AGLQHSQDSSLNQVPPNKKPRLGPSGANSGGPVMPSDYQHSSSRLNYQSSVQGSSQSQST 430 440 450 460 470 480 450 460 pF1KB5 MGYSATSQQPPQYSHQTHRY .:::..::: :: CCDS50 LGYSSSSQQSSQYHPSHQAHRY 490 500 >>CCDS75503.1 CDK19 gene_id:23097|Hs108|chr6 (442 aa) initn: 2254 init1: 2025 opt: 2078 Z-score: 997.6 bits: 193.8 E(32554): 3e-49 Smith-Waterman score: 2177; 76.2% identity (85.5% similar) in 433 aa overlap (61-457:1-433) 40 50 60 70 80 90 pF1KB5 TYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHAD :::::::::::::::::::.::::::::.: CCDS75 MSACREIALLRELKHPNVIALQKVFLSHSD 10 20 30 100 110 120 130 140 150 pF1KB5 RKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHR ::::::::::::::::::::::::::::::.::::.:::::::::::::::::::::::: CCDS75 RKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHR 40 50 60 70 80 90 160 170 180 190 200 210 pF1KB5 DLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 DLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARH 100 110 120 130 140 150 220 230 240 250 260 270 pF1KB5 YTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDI ::::::::::::::::::::::::::::::::::::.:::::::::.::::::::::::: CCDS75 YTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDI 160 170 180 190 200 210 280 290 300 310 320 330 pF1KB5 KKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAM .::::. ::.:::::.::.: ::::::::::::::::.: :::::::::: ::::::::. CCDS75 RKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQAL 220 230 240 250 260 270 340 350 360 370 pF1KB5 QDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQ-------------- ::::: :::::: ::::::::::::::::.:..:..::::..:::: CCDS75 QDPYFQEDPLPTLDVFAGCQIPYPKREFLNEDDPEEKGDKNQQQQQNQHQQPTAPPQQAA 280 290 300 310 320 330 380 390 400 410 pF1KB5 ---------QGNNHTNGT-GHPG------------NQDSSHTQGPPLKKVRVVPPTTTSG :....:::: : : .:::: .: :: :: :. : ..:: CCDS75 APPQAPPPQQNSTQTNGTAGGAGAGVGGTGAGLQHSQDSSLNQVPPNKKPRLGPSGANSG 340 350 360 370 380 390 420 430 440 450 460 pF1KB5 GLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYSATSQQPPQYSHQTHRY : .: ::::.:. . : . ..:: ::..:::..::: :: CCDS75 GPVMPSDYQHSSSRLNYQSSVQGSSQSQSTLGYSSSSQQSSQYHPSHQAHRY 400 410 420 430 440 464 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:29:53 2016 done: Sun Nov 6 05:29:54 2016 Total Scan time: 2.600 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]