FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4023, 211 aa 1>>>pF1KE4023 211 - 211 aa - 211 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9784+/-0.000719; mu= 15.6155+/- 0.044 mean_var=71.9276+/-14.598, 0's: 0 Z-trim(111.0): 172 B-trim: 334 in 1/50 Lambda= 0.151226 statistics sampled from 11815 (12016) to 11815 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.369), width: 16 Scan time: 2.230 The best scores are: opt bits E(32554) CCDS9222.1 RHOF gene_id:54509|Hs108|chr12 ( 211) 1398 313.5 6.1e-86 CCDS8155.1 RHOD gene_id:29984|Hs108|chr11 ( 210) 756 173.4 8.9e-44 CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 ( 192) 650 150.3 7.7e-37 CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 ( 192) 645 149.2 1.6e-36 CCDS2795.1 RHOA gene_id:387|Hs108|chr3 ( 193) 645 149.2 1.6e-36 CCDS854.1 RHOC gene_id:389|Hs108|chr1 ( 193) 644 149.0 1.9e-36 CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 ( 192) 612 142.0 2.4e-34 CCDS1699.1 RHOB gene_id:388|Hs108|chr2 ( 196) 604 140.2 8.2e-34 CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 ( 205) 601 139.6 1.3e-33 CCDS7748.1 RHOG gene_id:391|Hs108|chr11 ( 191) 595 138.3 3.1e-33 CCDS222.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 584 135.9 1.6e-32 CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 ( 214) 584 135.9 1.8e-32 CCDS221.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 581 135.2 2.6e-32 CCDS2190.1 RND3 gene_id:390|Hs108|chr2 ( 244) 568 132.5 2.2e-31 CCDS11452.1 RND2 gene_id:8153|Hs108|chr17 ( 227) 545 127.4 6.8e-30 CCDS82775.1 RHOA gene_id:387|Hs108|chr3 ( 187) 532 124.5 4.2e-29 CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 ( 258) 522 122.5 2.4e-28 CCDS8771.1 RND1 gene_id:27289|Hs108|chr12 ( 232) 501 117.8 5.4e-27 CCDS10068.1 RHOV gene_id:171177|Hs108|chr15 ( 236) 473 111.7 3.8e-25 CCDS3458.1 RHOH gene_id:399|Hs108|chr4 ( 191) 391 93.8 7.8e-20 CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 ( 211) 355 85.9 1.9e-17 CCDS73330.1 RHOD gene_id:29984|Hs108|chr11 ( 144) 343 83.2 9e-17 CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 272 67.8 5.3e-12 CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 271 67.6 6.5e-12 CCDS3170.1 RAP2B gene_id:5912|Hs108|chr3 ( 183) 259 64.9 3.5e-11 CCDS1123.1 RIT1 gene_id:6016|Hs108|chr1 ( 219) 255 64.1 7.4e-11 CCDS58037.1 RIT1 gene_id:6016|Hs108|chr1 ( 236) 255 64.2 7.8e-11 CCDS9271.1 RAN gene_id:5901|Hs108|chr12 ( 216) 254 63.9 8.5e-11 CCDS11921.1 RIT2 gene_id:6014|Hs108|chr18 ( 217) 254 63.9 8.5e-11 >>CCDS9222.1 RHOF gene_id:54509|Hs108|chr12 (211 aa) initn: 1398 init1: 1398 opt: 1398 Z-score: 1656.3 bits: 313.5 E(32554): 6.1e-86 Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN 130 140 150 160 170 180 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL ::::::::::::::::::::::::::::::: CCDS92 VEDVFREAAKVALSALKKAQRQKKRRLCLLL 190 200 210 >>CCDS8155.1 RHOD gene_id:29984|Hs108|chr11 (210 aa) initn: 749 init1: 749 opt: 756 Z-score: 899.4 bits: 173.4 E(32554): 8.9e-44 Smith-Waterman score: 756; 50.7% identity (79.1% similar) in 211 aa overlap (1-210:1-209) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV : : : : :: :: . .:.:.::::::::::::::...:.::: :.:.:::.: ... CCDS81 MTAAQA-AGEEAP-PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF : .: : :...:::::.:::::::: : .. ..:.:.:: .:.:.::.. .:.:::.:: CCDS81 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN :. .:....:::::::::: . ::: :::.:: .: ... :. ::::::....: CCDS81 CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 120 130 140 150 160 170 190 200 210 pF1KE4 VEDVFREAAKVALSALKKA-QRQKKRRLCLLL :. ::.:::.::::. . :. . .:.. CCDS81 VHAVFQEAAEVALSSRGRNFWRRITQGFCVVT 180 190 200 210 >>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 (192 aa) initn: 658 init1: 615 opt: 650 Z-score: 774.9 bits: 150.3 E(32554): 7.7e-37 Smith-Waterman score: 650; 50.5% identity (76.3% similar) in 194 aa overlap (18-211:2-192) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV . .: :.::::. ::: ::. :. ..:: .: :.::..:.:.: CCDS13 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV 10 20 30 40 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF : :: :.:.:.:::::::::::::::: .: . :::.....:.::.:: :::::: : CCDS13 MVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN : . :..:.: : ::: ::. ..::. .: :::: :::. ..: .. :::::: ... CCDS13 CPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRG 110 120 130 140 150 160 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL .. :: :: ...: . ::.:: : :: CCDS13 LKTVFDEAIRAVLCP--QPTRQQKRA-CSLL 170 180 190 >>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 (192 aa) initn: 661 init1: 606 opt: 645 Z-score: 769.0 bits: 149.2 E(32554): 1.6e-36 Smith-Waterman score: 645; 49.0% identity (76.3% similar) in 194 aa overlap (18-211:2-192) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV . .: :.::::. ::: ::. :. ..:: .: :.::..:.:.: CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV 10 20 30 40 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF : .: :.:.:.:::::::::::::::: .: . :::.....:.:..:: ::.::: : CCDS53 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN : . :..:.: : ::: ::. ..::. .: :::: :::. ..: :. :::::: ... CCDS53 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 110 120 130 140 150 160 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL .. :: :: ...: .:..: :::: CCDS53 LKTVFDEAIRAVLCP---PPVKKRKRKCLLL 170 180 190 >>CCDS2795.1 RHOA gene_id:387|Hs108|chr3 (193 aa) initn: 687 init1: 615 opt: 645 Z-score: 769.0 bits: 149.2 E(32554): 1.6e-36 Smith-Waterman score: 645; 49.2% identity (77.5% similar) in 191 aa overlap (21-211:7-193) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV :.::::::.:::: ::.:.:. .::: :.:.:::.:.:.. CCDS27 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 10 20 30 40 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF : .:.: : :.:::::::::::::::: .: ..:.:... .: : .:. :: ::: :: CCDS27 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN : ..:..:.: : :::.:.. :.: . ::. .: . ..: : :.::::: ... CCDS27 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 110 120 130 140 150 160 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL :..::. :...:: .:.: ::. ::.: CCDS27 VREVFEMATRAAL----QARRGKKKSGCLVL 170 180 190 >>CCDS854.1 RHOC gene_id:389|Hs108|chr1 (193 aa) initn: 648 init1: 624 opt: 644 Z-score: 767.8 bits: 149.0 E(32554): 1.9e-36 Smith-Waterman score: 644; 48.7% identity (77.5% similar) in 191 aa overlap (21-211:7-193) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV :.::::::.:::: ::.:.:. .::: :.:.:::.: :.. CCDS85 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI 10 20 30 40 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF : .:.: : :.:::::::::::::::: .: ..:.:... .: : .:. :: ::: :: CCDS85 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN : ..:..:.: : :::.:.. :.: . ::. .: . ..: : ::::::: .:. CCDS85 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 110 120 130 140 150 160 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL :..::. :....: .....:.:: : .: CCDS85 VREVFEMATRAGL----QVRKNKRRRGCPIL 170 180 190 >>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 (192 aa) initn: 612 init1: 612 opt: 612 Z-score: 730.1 bits: 142.0 E(32554): 2.4e-34 Smith-Waterman score: 612; 50.0% identity (78.4% similar) in 176 aa overlap (18-193:2-177) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV . .: :.::::. ::: ::. :. ..:: .: :.::..:.:.: CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV 10 20 30 40 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF : .: :.:.:.:::::::::::::::: .: . :::.....:.:..:: ::.::: : CCDS11 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN : :..:.: : ::: ::. ...:: .: :::: :::. ..: .. :::::: ... CCDS11 CPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRG 110 120 130 140 150 160 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL .. :: :: ...: CCDS11 LKTVFDEAIRAVLCPPPVKKPGKKCTVF 170 180 190 >>CCDS1699.1 RHOB gene_id:388|Hs108|chr2 (196 aa) initn: 604 init1: 604 opt: 604 Z-score: 720.6 bits: 140.2 E(32554): 8.2e-34 Smith-Waterman score: 604; 50.3% identity (78.0% similar) in 173 aa overlap (21-193:7-179) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV :.:.::::.:::: ::.:.:. ::: :.:.:::.:.:.. CCDS16 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI 10 20 30 40 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF : .:.: : :.:::::::::::::::: .: ..:.:..: .: : .:. :: ::: :: CCDS16 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN : ..:..:.. : :::.:.. .: . ::. .: . .:.: ::::::: .:. CCDS16 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 110 120 130 140 150 160 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL :..::. :...:: CCDS16 VREVFETATRAALQKRYGSQNGCINCCKVL 170 180 190 >>CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 (205 aa) initn: 587 init1: 587 opt: 601 Z-score: 716.8 bits: 139.6 E(32554): 1.3e-33 Smith-Waterman score: 601; 46.5% identity (72.7% similar) in 198 aa overlap (12-209:2-199) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV : ::: :: :.::::. ::: ::: :.. .:::.:.:.::..:..:: CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF :::.:. :.:::::::::::::::::: : . :::..:.::.:..:: .: ::. .. CCDS33 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN ..:..::: . ::: : . : .: . .:: :: . ..: : :.:::: ... CCDS33 APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 120 130 140 150 160 170 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL .. :: :: . :. :.. ... :. CCDS33 LKTVFDEAIIAILTPKKHTVKKRIGSRCINCCLIT 180 190 200 >>CCDS7748.1 RHOG gene_id:391|Hs108|chr11 (191 aa) initn: 620 init1: 568 opt: 595 Z-score: 710.1 bits: 138.3 E(32554): 3.1e-33 Smith-Waterman score: 595; 45.9% identity (74.2% similar) in 194 aa overlap (18-211:2-191) 10 20 30 40 50 60 pF1KE4 MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASV . .: :.::::. ::: ::. :. ..::..: :.::..:.:. CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQS 10 20 30 40 70 80 90 100 110 120 pF1KE4 TVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHF .: .. :.:::.::::::.::::: ::: .:.. .::... .: ::.:: :: ::: : CCDS77 AVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 CRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFREN : .:..:.: : ::: . . ::.:. ::: .:: . .::.:. :::::: ... CCDS77 CPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDG 110 120 130 140 150 160 190 200 210 pF1KE4 VEDVFREAAKVALSALKKAQRQKKRRLCLLL :..:: ::....:. :. : :.:: CCDS77 VKEVFAEAVRAVLNPTPI----KRGRSCILL 170 180 190 211 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:20:41 2016 done: Sun Nov 6 04:20:41 2016 Total Scan time: 2.230 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]